The utilization of phenylacetic acid (PA) in Escherichia coli occurs through a hybrid pathway that shows features of both aerobic and anaerobic metabolism. Oxygenation of the aromatic ring is performed by a multisubunit phenylacetyl-coenzyme A oxygenase complex that shares remote homology of two subunits to well studied bacterial multicomponent monooxygenases and was postulated to form a new bacterial multicomponent monooxygenase subfamily. We expressed the subunits PaaA, B, C, D, and E of the PA-CoA oxygenase and showed that PaaABC, PaaAC, and PaaBC form stable subcomplexes that can be purified. In vitro reconstitution of the oxygenase subunits showed that each of the PaaA, B, C, and E subunits are necessary for catalysis, whereas PaaD is not essential. We have determined the crystal structure of the PaaAC complex in a ligand-free form and with several CoA derivatives. We conclude that PaaAC forms a catalytic core with a monooxygenase fold with PaaA being the catalytic ␣ subunit and PaaC, the structural  subunit. PaaAC forms heterotetramers that are organized very differently from other known multisubunit monooxygenases and lacks their conservative network of hydrogen bonds between the di-iron center and protein surface, suggesting different association with the reductase and different mechanisms of electron transport. The PaaA structure shows adaptation of the common access route to the active site for binding a CoA-bound substrate. The enzyme-substrate complex shows the orientation of the aromatic ring, which is poised for oxygenation at the orthoposition, in accordance with the expected chemistry. The PACoA oxygenase complex serves as a paradigm for the new subfamily multicomponent monooxygenases comprising several hundred homologs.Aromatic organic compounds represent a major class of environmental pollutants (1). Many microbes can grow using these molecules as an abundant source of nutrients and a carbon source. Under anaerobic conditions, the metabolism of aromatic compounds proceeds through initial conversion to a CoA derivative, which is then reduced in an ATP-dependent reaction (2). In the presence of oxygen, bacteria utilize a wide variety of oxygenases to activate the inert aromatic ring (3). In aerobic pathways that utilize multisubunit dioxygenases or non-heme monooxygenases, both the hydroxylation of the aromatic ring and its cleavage are oxygen-dependent (1). Dioxygenases incorporate two adjacent hydroxyl groups into the aromatic ring (4). For metabolism that relies on monooxygenases, the consecutive action of two such enzymes is required, with insertion of one hydroxyl group at each step, as is the case in Pseudomonas stutzeri OX1 with toluene/o-xylene monooxygenase and phenol hydroxylase performing these reactions (5).An aerobic hybrid pathway combines the features of classic aerobic and anaerobic strategies (6). As in anaerobic metabolism, the aromatic compound is attached to CoA, but the substrate is oxygenated, whereas the ring opening proceeds without oxygen. This pathway is present in many...