Micrographs of mouse liver gap junctions, isolated with detergents, and negatively stained with uranyl acetate, have been recorded by low-irradiation methods. Our Fourieraveraged micrographs of the hexagonal junction lattice show skewed, hexameric connexons with less stain at the threefold axis than at the six indentations between the lobes of the connexon image. These substructural features, not clearly observed previously, are acutely sensitive to irradiation. After an electron dose less than that normally used in microscopy, the image is converted to the familiar doughnut shape, with a darkly stained center and a smooth hexagonal outline, oriented with mirror symmetry in the lattice. Differences in appearance among 25 reconstructed images from our low-irradiation micrographs illustrate variation in staining of the connexon channel and the space between connexons. Consistently observed stain concentration at six symmetrically related sites ~34 tk from the connexon center, 8 ° to the right or left of the (1, 1) lattice vector may reveal an intrinsic asymmetric feature of the junction structure. The unexpected skewing of the six-lobed connexon image suggests that the pair of hexagonal membrane arrays that form the junction may not be structurally identical. Because the projected image of the connexon pair itself appears mirror symmetric, each pair may consist of two identical connexon hexamers related by local (noncrystallographic) twofold axes in the junctional plane at the middle of the gap. All connexons may be chemically identical, but their packing in the hexagonal arrays on the two sides of the junction appears to be nonequivalent.Gap junctions in liver (13, 28) and many other tissues (5, 10) are built of connexon units (6) hexagonally arrayed with crystaUike regularity in the pair of connected cell membranes. Makowski et al. (21) proposed a model for the junction structure based on data from x-ray diffraction, electron microscopy and chemical analysis in which the connexon units were pictured as symmetric hexamers of identical connexin molecules that are equivalently paired across the gap with dihedral symmetry in the two-sided hexagonal plane group (p622; see reference 16). This model predicts that, as normally viewed in electron micrographs of untilted, negatively stained specimens, the junction lattice should appear mirror-symmetric in projection (with p6m plane group symmetry).Conventional high-irradiation micrographs of negatively stained specimens show doughnut-shaped connexons that appear nearly circularly symmetric in the Fourier-averaged images, and, therefore, the hexagonal lattice array, appear to have mirror symmetry (6). Higher resolution, hexagonally averaged reconstructions calculated by Zampighi and Unwin (33) from minimal irradiation micrographs of two forms of gap junctions, negatively stained with uranyl acetate, showed hexagonal shaped connexons arrayed with approximate mirror symmetry in the projected lattice images. However, the hexagonally shaped connexon images occured in ...