Noncovalent polymer-single walled carbon nanotube (SWCNT) conjugates have
gained recent interest due to their prevalent use as electrochemical and optical
sensors, SWCNT-based therapeutics, and for SWCNT separation. However, little is
known about the effects of polymer-SWCNT molecular interactions on functional
properties of these conjugates. In this work, we show that SWCNT complexed with
related polynucleotide polymers (DNA, RNA) have dramatically different
fluorescence stability. Surprisingly, we find a difference of nearly 2500-fold
in fluorescence emission between the most fluorescently stable DNA-SWCNT
complex, C30 DNA-SWCNT, compared to the least fluorescently stable
complex, (AT)7A-(GU)7G DNA-RNA hybrid-SWCNT. We further
reveal the existence of three regimes in which SWCNT fluorescence varies
nonmonotonically with SWCNT concentration. We utilize molecular dynamics
simulations to elucidate the conformation and atomic details of SWCNT-corona
phase interactions. Our results show that variations in polynucleotide sequence
or sugar backbone can lead to large changes in the conformational stability of
the polymer SWCNT corona and the SWCNT optical response. Finally, we demonstrate
the effect of the coronae on the response of a recently developed dopamine
nanosensor, based on (GT)15 DNA- and (GU)15 RNA-SWCNT
complexes. Our results clarify several features of the sequence dependence of
corona phases produced by polynucleotides adsorbed to single walled carbon
nanotubes, and the implications for molecular recognition in such phases.