Land‐use change modifies the spatial structure of tropical landscapes, shaping global biodiversity patterns. Yet, it remains unknown how key ecological processes, such as seed dispersal, can be affected by changes in landscape patterns, and whether such effects differ among regions with different climate and disturbance intensity. We assessed the effect of five landscape metrics (forest cover, matrix openness, forest edge density, forest fragmentation, and interpatch distance) on the seed rain recorded in two Mexican fragmented regions (20 forest sites per region): the more deforested, defaunated, and windy Los Tuxtlas rainforest (LTX), and the better‐preserved Lacandona rainforest (LAC). We quantified the proportions of dispersed tree species and their seeds, separately evaluating wind‐ and animal‐dispersed species. Our findings support the hypothesis that forest loss is more important than fragmentation per se, negatively impacting the seed rain in both regions. As expected, landscape patterns were comparatively more important for wind‐dispersed seeds in LTX, probably because of stronger wind events in this region. Specifically, proportions of wind‐dispersed seeds and species decreased with increasing edge density, suggesting that forest edges prevent dispersal of wind‐dispersed species, which may occur if edges create physical barriers that limit wind flow. This pattern can also be caused by source limitation in landscapes with more forest edges, as tree mortality rates usually increase at forest edges. The wind‐dispersed seed rain was also positively related to matrix openness, especially in LTX, where wind flow can be favored by the dominance of treeless anthropogenic matrices. Surprisingly, the proportion of animal‐dispersed seeds in LTX was positively related to matrix openness and patch isolation, suggesting that seed dispersers in more deforested regions may be forced to concentrate in isolated patches and use the available habitat more intensively. Yet, as expected, patch isolation limited wind‐dispersed seeds in LAC. Therefore, dispersal (and potentially regeneration) of wind‐dispersed trees is favored in regions exposed to stronger wind events, especially in landscapes dominated by regularly shaped patches surrounded by open areas. Conversely, animal‐dispersed seeds are primarily favored by increasing forest cover. Preventing forest loss is therefore critical to promote animal seed dispersal and forest recovery in human‐modified rainforests.