A recent experiment involving simian immunodeficiency virus (SIV) infection of macaques revealed that the infectivity of this virus decreased over the first few months of infection. Based on this observation, we introduce a viral dynamic model in which viral infectivity varies over time. The model is fit to viral load data from eight (donor) monkeys infected by intravaginal inoculation of SIVmac251, three monkeys infected by intravenous inoculation of virus isolated from the donors during the ramp-up phase of acute infection, and three monkeys infected by intravenous inoculation of virus isolated at the viral set-point. Although we only analyze data from 14 monkeys, the new model with time-dependent infectivity seems to fit the data significantly better than a widely used model with constant infectivity (P ؍ 2.44 ؋ 10 ؊11 ). Our results indicate that plasma virus infectivity on average decays ϳ8-fold (95% confidence interval [CI] ؍ 5.1 to 10.3) over the course of acute infection, with the decay occurring exponentially with an average rate of 0.28 day ؊1 (95% CI ؍ 0.14 to 0.42 day ؊1 ). The decay rate in set point plasma virus recipient animals is ϳ16 times slower than in ramp-up plasma virus recipient animals and ϳ6 times slower than in donor animals. Throughout acute infection up to the set-point, the infection rate is higher in ramp-up plasma virus recipient animals than in set-point plasma virus recipient animals. These results show that the infectivity depends upon the source of viral infection.During primary human immunodeficiency virus type 1 (HIV-1) infection, the number of virus particles in plasma increases rapidly, reaches a peak, and then declines until it reaches a set-point level (i.e., a quasi-steady state) (9, 43). During the first 1 to 3 weeks of a typical HIV infection the viral load remains below the limit of detection of conventional assays (12). This period, known as the eclipse phase, is followed by a 2-to 4-week ramp-up period, during which rapid (exponential) viral replication takes place, resulting in high plasma viral RNA levels and significant depletion of CCR5 ϩ CD4 ϩ T cells (12,24,31,47).A recent experiment indicates that the infectivity of SIV changes over time during primary infection (26). Ma et al. (26) infected macaques with SIV isolated either during ramp-up or at set-point. They found that early-stage plasma containing 20 SIV RNA copies could successfully infect animals, while with set-point plasma ϳ1,500 SIV RNA copies were needed to establish infection. As suggested by Ma et al. (26), the highly infectious virus during the early phase compared to the chronic phase could be due to (i) insufficient rounds of replication during the early phase to produce enough noninfectious viral genomes; (ii) coating of the set-point phase plasma virions with antibodies that interfere with infectivity; and/or (iii) efficient elimination during early-phase infection of less-infectious genomes. Preliminary data comparing the ratio of the 50% tissue culture infectious dose (TCID 50 ) wit...