Chromosomal traits and their variation were investigated for a total of 435 plants from 23 local populations of the three subspecies of Chamaelirium hisauchianum. 334 out of 340 plants of subsp. kurohimense had 2n=44=12L+32S (where L and S denote long and short respectively) with the base number 22 (x 1 ), and six others were all hyperploids with 2n=45 (2x 1 +1; five plants) or 46 (2x 1 +2; one plant). In subsp. hisauchianum, 46 out of 48 plants had 2n=42=14L+28S with the base number 21 (x 2 ), and two others had 2n=42 (2x 2 ) with an aberrant karyotype or 2n=43 (2x 2 +1). In subsp. minoense, 45 out of 47 plants, like subsp. hisauchianum, possessed 2n=42=14L+28S (x 2 =21), and two others showed 2n=43 (2x 2 +1) or 45 (2x 2 +3). All of the observed chromosomal variants exhibited structural heterozygosity and presumably arose by fission, fusion, and duplication probably derived from irregular chromosomal disjunction. The chromosomal variants found in all populations examined amounted to 2.3% on average. Pollen stainability with cotton blue in four chromosomal variants of subsp. kurohimense and minoense was lower than in chromosomally normal plants. Some topics relevant to the results were also discussed, comparing with the data previously reported for C. japonicum and C. koidzumianum that markedly differ in the mating system as well as some chromosomal traits.