A gene encoding a new thermostable D-stereospecific alanine amidase from the thermophile Brevibacillus borstelensis BCS-1 was cloned and sequenced. The molecular mass of the purified enzyme was estimated to be 199 kDa after gel filtration chromatography and about 30 kDa on sodium dodecyl sulfate-polyacrylamide gel electrophoresis, indicating that the enzyme could be composed of a hexamer with identical subunits. The purified enzyme exhibited strong amidase activity towards D-amino acid-containing aromatic, aliphatic, and branched amino acid amides yet exhibited no enzyme activity towards L-amino acid amides, D-amino acidcontaining peptides, and NH 2 -terminally protected amino acid amides. The optimum temperature and pH for the enzyme activity were 85°C and 9.0, respectively. The enzyme remained stable within a broad pH range from 7.0 to 10.0. The enzyme was inhibited by dithiothreitol, 2-mercaptoethanol, and EDTA yet was strongly activated by Co 2؉ and Mn 2؉ . The k cat /K m for D-alaninamide was measured as 544.4 ؎ 5.5 mM ؊1 min ؊1 at 50°C with 1 mM Co 2؉ .D-Amino acids occur in bacterial cell wall peptidoglycan (28), mammalian cells (11), higher plants (25), and active peptides (5,13,14,24) and are important materials for various pharmaceuticals, herbicides, and food additives (1). Unlike L-amino acids, almost all D-amino acids are obtained by using enzymatic methods; otherwise it is difficult to obtain a high state of optical purity and productivity (1,22). Peptides incorporating D-amino acids exhibit stronger antimicrobial properties than peptides with L-isomers because D-isomers appear to be more stable against proteolytic digestion than L-isomers (12). These facts have already been verified by various studies on the fate of D-amino acids in peptides and proteins (21,23).Enzymatic biotransformations in which optically pure D-amino acids are produced from DL-amino acid racemic mixtures by D-amino acid-specific enzymes have been determined to be most feasible for the production of D-amino acids with a high optical purity and yield (1). To apply this system, many microbial D-amino acid-specific enzymes have already been screened and subjected to direct enzyme methods (22).Although the synthesis of bioactive peptides incorporating D-amino acids instead of their L-counterparts could lead to metabolically stable and long-acting products, this has been hampered because of the need to use expensive processes that suffer from low stereoselectivity, low temperature stability, and the production of undesired by-products due to the use of an undesirable biocatalyst (1). Accordingly, thermolabile enzymes have been considered inappropriate for the harsh reaction conditions required in industrial processes. However, D-amino acid-specific enzymes have recently attracted much attention in regard to the synthesis of useful bioactive D-peptides and enantioselective synthesis of D-amino acids from DL-amino acid racemic mixtures (16,18,19,22). Among these enzymes, Daminoacylase (9, 29), D-aminopeptidase (2), and D-amino acid a...