Introduction
Pathogenic variants in
SURF1
, a nuclear-encoded gene encoding a mitochondrial chaperone involved in COX assembly, are one of the most common causes of Leigh syndrome (LS).
Material-methods
Sixteen patients diagnosed to have
SURF1
-related LS between 2012 and 2020 were included in the study. Their clinical, biochemical and molecular findings were recorded. 10/16 patients were diagnosed using whole-exome sequencing (WES), 4/16 by Sanger sequencing of
SURF1
, 1/16 via targeted exome sequencing and 1/16 patient with whole-genome sequencing (WGS). The pathogenicity of
SURF1
variants was evaluated by phylogenetic studies and modelling on the 3D structure of the SURF1 protein.
Results
We identified 16 patients from 14 unrelated families who were either homozygous or compound heterozygous for
SURF1
pathogenic variants. Nine different
SURF1
variants were detected The c.769G > A was the most common variant with an allelic frequency of 42.8% (12/28), c.870dupT [(p.Lys291*); (8/28 28.5%)], c.169delG [(p.Glu57Lysfs*15), (2/24; 7.1%)], c.532 T > A [(p.Tyr178Asn); (2/28, 7.1%)], c.653_654delCT [(p.Pro218Argfs*29); (4/28, 14.2%)] c.595_597delGGA [(p.Gly199del); (1/28, 3.5%)], c.751 + 1G > A (2/28, 4.1%), c.356C > T [(p.Pro119Leu); (2/28, 3.5%)] were the other detected variants. Two pathogenic variants, C.595_597delGGA and c.356C > T, were detected for the first time. The c.769 G > A variant detected in 6 patients from 5 families was evaluated in terms of phenotype-genotype correlation. There was no definite genotype – phenotype correlation.
Conclusions
To date, more than 120 patients of LS with
SURF1
pathogenic variants have been reported. We shared the clinical, molecular data and natural course of 16 new SURF1 defect patients from our country. This study is the first comprehensive research from Turkey that provides information about disease-causing variants in the
SURF1
gene. The identification of common variants and phenotype of the
SURF1
gene is important for understanding SURF1 related LS.
Synopsis
SURF1 gene defects are one of the most important causes of LS; patients have a homogeneous clinical and biochemical phenotype.