“…However, despite the use of current antiretroviral drugs, HIV-1 can still persists in infected individuals by accumulating mutations, which make it resistant to one or more drugs. The antiretroviral drug resistant mutations can be identified by one or more of the following: (a) in vitro passage experiments or site directed mutagenesis studies (Clark et al, 2006); (b) mutagenically separated PCR (Frater et al, 2001); (c) drug susceptibility testing (Petropoulos et al, 2000;Svicher et al, 2011); (d) nucleotide sequencing of viruses from patients failing a specific drug (McNicholas et al, 2011;Shulman et al, 2004); (e) correlation studies between genotype at baseline and virologic response in patients exposed to a specific antiretroviral drug (Demeter et al, 2008). Currently, more than 200 mutations in the HIV-1 pol and env genes associated with resistance to current antiretroviral drugs, which include reverse transcriptase inhibitors (RTIs), protease inhibitors (PIs), integrase inhibitors (INI), fusion inhibitors and attachment inhibitors respectively, have been identified (V. A.…”