The nodulation genes of rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. We have identified the nodZ gene of Bradyrhizobium japon&um, whose product is required for the addition of a 2-0-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation of siratro. Surprisingly, although nodZ clearly codes for nodulation function, it is not regulated by NodD and, indeed, shows elevated expression in planta. Therefore, nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal.Leguminous plants are infected (nodulated) by the gramnegative, soil bacteria Rhizobium, Azorhizobium, and Bradyrhizobium species, which establish a nitrogen-fixing symbiosis within the roots. There is now considerable information available concerning the genetic traits of these bacteria that are required for the establishment of nitrogen-fixing symbiosis. A number of nodulation (nod, nol) genes have been identified (48). These genes fall into two general groups: the common nod genes (e.g., nodABC) that are essential for nodulation of any host and the host specificity genes that appear to determine specific nodulation of a narrow range of hosts (reviewed in references 13, 14, and 21). Recent evidence indicates that the function of many, if not all, of the nod genes is to synthesize or modify lipooligosaccharide signal molecules that initiate many of the initial nodulation responses in the plant (13, 14, 55). For example, Rhizobium meliloti has been shown to synthesize a sulfated lipooligosaccharide that induces many of the early events of nodulation when applied to alfalfa roots (13,14). Recent results indicate that the protein products of the host specificity genes of R. meliloti, nodHPQ, are involved in the specific sulfation reaction leading to the synthesis of NodRm-1 (e.g., see references 4, 41, and 50). We recently identified the lipooligosaccharide nodulation signals produced by Bradyrhizobium japonicum USDA110 and USDA135 and Bradyrhizobium elkanii USDA61 (9,47 NodD (6,25,33