Leaf‐cutting ants and their fungal crops are a textbook example of a long‐term obligatory mutualism. Many microbes continuously enter their nest containing the fungal cultivars, destabilizing the symbiosis and, in some cases, outcompeting the mutualistic partners. Preferably, the ant workers should distinguish between different microorganisms to respond according to their threat level and recurrence in the colony. To address these assumptions, we investigated how workers of
Atta sexdens
sanitize their fungal crop toward five different fungi commonly isolated from the fungus gardens:
Escovopsis
sp.,
Fusarium oxysporum
,
Metarhizium anisopliae
,
Trichoderma spirale
, and
Syncephalastrum
sp. Also, to investigate the plasticity of these responses toward recurrences of these fungi, we exposed the colonies with each fungus three times fourteen days apart. As expected, intensities in sanitization differed according to the fungal species. Ants significantly groom their fungal crop more toward
F. oxysporum
,
M. anisopliae
, and
Syncephalastrum
sp. than toward
Escovopsis
sp. and
T. spirale
. Weeding, self‐, and allogrooming were observed in less frequency than fungus grooming in all cases. Moreover, we detected a significant increase in the overall responses after repeated exposures for each fungus, except for
Escovopsis
sp. Our results indicate that
A. sexdens
workers are able to distinguish between different fungi and apply distinct responses to remove these from the fungus gardens. Our findings also suggest that successive exposures to the same antagonist increase hygiene, indicating plasticity of ant colonies' defenses to previously encountered pathogens.