2008
DOI: 10.1128/mcb.00136-08
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How Antigen Quantity and Quality Determine T-Cell Decisions in Lymphoid Tissue

Abstract: T lymphocytes (T cells) express T-cell receptor (TCR) molecules on their surface that can recognize peptides (p) derived from antigenic proteins bound to products of the major histocompatibility complex (MHC) genes. The pMHC molecules are expressed on the surface of antigen-presenting cells, such as dendritic cells (DCs). T cells first encounter antigen on DCs in lymph nodes (LN). Intravital microscopy experiments show that upon entering the LN containing antigen, CD8؉ T cells first move rapidly. After a few h… Show more

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Cited by 62 publications
(73 citation statements)
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References 51 publications
(129 reference statements)
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“…Subsequent work by Smith et al established parameters for a shape space model using immunological data (18) and later adapted it for use in a stochastic simulation of affinity maturation to accurately predict the efficacy of repeated influenza vaccinations from clinical data (19). Beyond studying affinity maturation, computational immunology approaches been used to study T cell activation (20,21) and specificity (22), viral infection and adaptation (23)(24)(25)(26)(27), and innate immunity (28).…”
mentioning
confidence: 99%
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“…Subsequent work by Smith et al established parameters for a shape space model using immunological data (18) and later adapted it for use in a stochastic simulation of affinity maturation to accurately predict the efficacy of repeated influenza vaccinations from clinical data (19). Beyond studying affinity maturation, computational immunology approaches been used to study T cell activation (20,21) and specificity (22), viral infection and adaptation (23)(24)(25)(26)(27), and innate immunity (28).…”
mentioning
confidence: 99%
“…We set values for immunogenicity for each epitope based on the relative Ab titers for each epitope determined from experimental data (see Results). The stimulation rate for both naive and memory B cells was set to (3 d) 21 , which reflects experimental data that suggest that 50-80% of these cells begin division ∼75 h following Ag exposure (54). The B cell stimulation reaction has a maximum rate of s max B j , which reflects the maximum rate of GC B cell stimulation in the presence of excess Ag.…”
mentioning
confidence: 99%
“…These secreted molecules affect cell behaviors such as rate of proliferation and cell death. Previous studies on such cell systems attempted to include many cell types and interactions in a model involving numerous biochemical parameters and variables (2)(3)(4)(5). Other works focused on the effects of a single cell type responding, for example, to a ligand that it secretes itself; these works showed the interplay between cell to cell variability and positive feedback, leading to bistability (selection), formation of thresholds for immune response, and memory (6,7).…”
mentioning
confidence: 99%
“…Along with signal 1, T cells activation also needs costimulatory signal 2, provided by interaction of CD80/CD86 (surface of antigen presenting cells) and CD28 (surface of T lymphocytes). [8][9][10][11] Signals 1 and 2 activate downstream signal transduction pathways, which include calcium/ calcineurin pathway (target for calcineurin inhibitors), RAS mitogen activated protein (MAP) kinase and nuclear factor kappa B (NF-kB) pathways which in turn leads to transcription of cytokines including interleukin-2 (IL-2). Interleukin-2 acts on other immune cells providing signal 3 trigger for cell proliferation.…”
mentioning
confidence: 99%