Digital palaeography is an emerging research area which aims to introduce digital image processing techniques into palaeographic analysis for the purpose of providing objective quantitative measurements. This paper explores the use of a fully automated handwriting feature extraction, visualisation and analysis system for digital palaeography which bridges the gap between traditional and digital palaeography in terms of the deployment of feature extraction techniques and handwriting metrics. We propose the application of a set of features, more closely related to conventional palaeographic assesment metrics than those commonly adopted in automatic writer identification. These features are emprically tested on two datasets in order to assess their effectiveness for automatic writer identification and aid attribution of individual handwriting characteristics in historical manuscripts. Finally, we introduce tools to support visualisation of the extracted features in a comparative way, showing how they can best be exploited in the implementation of a content-based image retrieval (CBIR) system for digital archiving.