Organophosphonate (Pn) catabolism
constitutes the major source
of inorganic phosphate (Pi), which is essential for the synthesis
of genetic and cellular components. Unlike various C–P hydrolases,
the nonheme diiron enzyme PhnZ catalyzes the oxidative transformation
of Pn (R)-2-amino-1-hydroxyethylphosphonic ((R)-OH-AEP) into glycine and Pi. Full enzymatic molecular
mechanisms, starting from the initial oxygen activation to the C–P
bond activation, are not yet understood. Using quantum mechanics/molecular
mechanics (QM/MM) calculations, we uncover the oxygen activation and
organophosphonate catabolism mechanisms by PhnZ. In contrast to previous
studies, our calculations show that the Fe1(II)-catalyzed homolytic
cleavage of an O–O bond of a Fe2(III)Fe1(II)-hemiketal intermediate
is involved in the catalysis, affording the Fe1(IV) = O species that
is responsible for the O–H bond activation of the geminal diolate
intermediate. The following C–P cleavage and O–P formation
were found to be facile in the resulting O-centered substrate radical
species. On the basis of QM/MM calculations, we propose a catalytic
cycle of PhnZ that is in line with the experimental kinetics. In particular,
our study demonstrates that the catalytic cycle of PhnZ involves the
spin-regulated electron transfer, Fe(II)-catalyzed homolytic cleavage
of the O–O bond, general acid–base catalysis of a bridging
OH ligand, and the cooperative catalysis of Fe1 and Fe2. Such wonderful
catalysis of PhnZ would expand our understanding of the catalysis
and function of nonheme diiron oxygenases.