Hypoxia-inducible factor (HIF) is a heterodimeric transcription factor induced by hypoxia. Under normoxic conditions, site-specific proline hydroxylation of the ␣ subunits of HIF allows recognition by the von Hippel-Lindau tumor suppressor protein (VHL), a component of an E3 ubiquitin ligase complex that targets these subunits for degradation by the ubiquitin-proteasome pathway. Under hypoxic conditions, this hydroxylation is inhibited, allowing the ␣ subunits of HIF to escape VHL-mediated degradation. Three enzymes, prolyl hydroxylase domain-containing proteins 1, 2, and 3 (PHD1, -2, and -3; also known as HIF prolyl hydroxylase 3, 2, and 1, respectively), have recently been identified that catalyze proline hydroxylation of HIF ␣ subunits. These enzymes hydroxylate specific prolines in HIF ␣ subunits in the context of a strongly conserved LXXLAP sequence motif (where X indicates any amino acid and P indicates the hydroxylacceptor proline). We report here that PHD2 has the highest specific activity toward the primary hydroxylation site of HIF-1␣. Furthermore, and unexpectedly, mutations can be tolerated at the ؊5, ؊2, and ؊1 positions (relative to proline) of the LXXLAP motif. Thus, these results provide evidence that the only obligatory residue for proline hydroxylation in HIF-1␣ is the hydroxylacceptor proline itself.A critical means by which cells respond to stress is by the modulation of gene expression. The cellular response to hypoxia provides a cardinal example of this (1-3). Low oxygen tension (1% O 2 ) induces a battery of genes that allow cells to increase their uptake of glucose (through up-regulation of specific isoforms of the glucose transporter) and shift utilization of this energy source from aerobic to glycolytic metabolism (through up-regulation of genes such as phosphofructokinase, aldolase, and glyceraldehyde-3-phosphate dehydrogenase, among others) (4). Low oxygen tension also induces the upregulation of genes involved in local and systemic responses to hypoxia. An example of the former is vascular endothelial growth factor, a potent angiogenic agent, whereas an example of the latter is erythropoietin, the central regulator of red blood cell maturation.
Hypoxia-inducible factor (HIF)1 is a transcription factor that is the master regulator of all of the above genes (1, 2). HIF is heterodimeric and comprises an ␣ and a  subunit, both of which in turn are members of the PAS family of transcription factors. The  subunit is a member of the aryl hydrocarbon nuclear translocator family of proteins. Three ␣ subunit isoforms have been identified, HIF-1␣, HIF-2␣, and HIF-3␣ (5-9). The central mechanism by which HIF is activated by hypoxia is by regulated stabilization of the ␣ subunit. In the case of HIF-1␣, the most intensively studied isoform, two proline residues, Pro-402 and Pro-564, are constitutively hydroxylated under normoxic conditions (10 -13). This hydroxylation allows binding by the von Hippel-Lindau tumor suppressor protein (VHL) (14), the substrate recognition component of an E3 ubiquit...