Food safety has become a major issue worldwide and, in particular, detecting the presence of toxins, contaminants or residues of chemical substances along the food chain and in fine in foods constitutes a strong consumers demand. In general, all these substances and the corresponding metabolites of interest are analyzed using efficient targeted methodologies. However, in some cases these targeted approaches do not allow the detection of emerging compounds or practices, and therefore new approaches and strategies are required. Thus, the study of physiological perturbations induced by exposure to a given chemical substance has emerged as an interesting alternative approach to apply in chemical food safety.This review focuses on describing significant applications of metabolomics in the field of risk analysis from a chemical food safety perspective. The different risk assessment steps, including hazard identification, doseresponse assessment and exposure assessment, and risk management are addressed through various examples to illustrate that such an approach is fit-for-purpose and meets the expectations and requirements of chemical risk analysis. It can be considered as an innovative tool for predicting the probable occurrence and nature of risks, while addressing the current challenges of chemical risk analysis (e.g. replacement, reduction and refinement (3R) of animal testing, effects of exposure to chemical mixtures at low doses, etc.), and with the aim of responding to global food safety issues and anticipating human health problems.