Chaotic scattering in three dimensions has not received as much attention as in two dimensions so far. In this paper, we deal with a three-dimensional open Hamiltonian system whose Wada basin boundaries become non Wada when the critical energy value is surpassed in the absence of dissipation. In particular, we study here the dissipation effects on this topological change, which has no analogy in two dimensions. Hence, we find that non-Wada basins, expected in the absence of dissipation, transform themselves into partially Wada basins when a weak dissipation reduces the system energy below the critical energy. We provide numerical evidence of the emergence of the Wada points on the basin boundaries under weak dissipation. According to the paper findings, Wada basins are typically driven, enhanced and, consequently, structurally stable under weak dissipation in three-dimensional open Hamiltonian systems.