Howling from the past: historical phylogeography and diversity losses in European grey wolves

Dufresnes, Christophe; Miquel, Christian; Remollino, Nadège; Biollaz, François; Salamin, Nicolas; Taberlet, Pierre; Fumagalli, Luca

doi:10.1098/rspb.2018.1148

Cited by 45 publications

(67 citation statements)

References 76 publications

(89 reference statements)

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“…The longer regions (361 bp) obtained from Sic1 and Sic2 resulted to be identical and largely matched (290 bp) with a historical wolf sample from Hungary dated 1899 (Dufresnes et al, 2018).…”

Section: Haplotypes and Haplogroupsmentioning

confidence: 60%

The Sicilian wolf: Genetic identity of a recently extinct insular population

Angelici¹,

Ciucani

Angelini

et al. 2018

Preprint

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During historical times many local populations of grey wolf (Canis lupus), once the most diffused mammal in the world, became extinct. Among these the Sicilian population, the biggest island of the Mediterranean Sea, was eradicated by human persecution in the early decades of the XX century.In order to reconstruct the genetic identity of the Sicilian wolf, we used ancient DNA techniques to analyse the mitochondrial DNA of the six known specimens actually stored in museums.We have successfully extracted and amplified a mtDNA fragment of the control region (CR) from four samples. Our analyses show that two samples have the same haplotype, that differs by two substitutions from the most diffused Italian haplotype (W14) and one substitution from the second Italian rare haplotype (W16). One of the others two samples shows a new wolf haplotype never described before and the fourth a haplotype common in dogs.Furthermore, all the detected wolf haplotypes in this study belonged to the mitochondrial haplogroup to which the Pleistocene European wolves and several current southern Europe haplotypes belong.Unfortunately, this endemic population of Mediterranean wolf, was definitively lost before it has been possible to understand its uniqueness and importance regards conservation.

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Section: Haplotypes and Haplogroupsmentioning

confidence: 60%

The Sicilian wolf: Genetic identity of a recently extinct insular population

Angelici¹,

Ciucani

Angelini

et al. 2018

Preprint

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“…There are several potential causes for low diversity in natural populations, including life history attributes, selective processes, demographic fluctuations, and exploitation bottlenecks. However, for species with long histories of exploitation, such as cetaceans, preharvest population structure or census size is poorly known, and typically few archival specimens are available to reconstruct genetic impacts of harvesting (but see Dufresnes et al, ; Phillips et al, ). Consequently, studies are increasingly reliant on contemporary sample‐based genetic reconstructions to identify historical bottlenecks, assess genetic resilience and population recovery from past demographic events, and estimate species' evolutionary trajectories (Attard et al, ; Carroll et al, ; Emami‐Khoyi et al, ; Foote et al, ).…”

Section: Discussionmentioning

confidence: 99%

Evolutionary impacts differ between two exploited populations of northern bottlenose whale (Hyperoodon ampullatus)

Feyrer

Bentzen

Whitehead

et al. 2019

Ecology and Evolution

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Interpretation of conservation status should be informed by an appreciation of genetic diversity, past demography, and overall trends in population size, which contribute to a species' evolutionary potential and resilience to genetic risks. Low genetic diversity can be symptomatic of rapid demographic declines and impose genetic risks to populations, but can also be maintained by natural processes. The northern bottlenose whale Hyperoodon ampullatus has the lowest known mitochondrial diversity of any cetacean and was intensely whaled in the Northwest Atlantic over the last century, but whether exploitation imposed genetic risks that could limit recovery is unknown. We sequenced full mitogenomes and genotyped 37 novel microsatellites for 128 individuals from known areas of abundance in the Scotian Shelf, Northern and Southern Labrador, Davis Strait, and Iceland, and a newly discovered group off Newfoundland. Despite low diversity and shared haplotypes across all regions, both markers supported the Endangered Scotian Shelf population as distinct from the combined northern regions. The genetic affinity of Newfoundland was uncertain, suggesting an area of mixing with no clear population distinction for the region. Demographic reconstruction using mitogenomes suggests that the northern region underwent population expansion following the last glacial maximum, but for the peripheral Scotian Shelf population, a stable demographic trend was followed by a drastic decline over a temporal scale consistent with increasing human activity in the Northwest Atlantic. Low connectivity between the Scotian Shelf and the rest of the Atlantic likely compounded the impact of intensive whaling for this species, potentially imposing genetic risks affecting recovery of this population. We highlight how the combination of historical environmental conditions and modern exploitation of this species has had very different evolutionary impacts on structured populations of northern bottlenose whales across the western North Atlantic.

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“…9 kyrs BP; (43)) has now been proposed for several mammals (10,43). When the ice retreated from northern Scandinavia after the Younger Dryas, a lack of geographic barriers led to later dispersal into the region from the east (42,53), a pattern that is evident in other carnivores also (19,55).…”

Section: Phylogeographic Structure Of the Red Fox In Europementioning

confidence: 99%

Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe

McDevitt

Coscia

Browett

et al. 2020

Preprint

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Carnivores tend to exhibit a lack of (or less pronounced) genetic structure at continental scales in both a geographic and temporal sense using various mitochondrial DNA markers on modern and/or ancient specimens. This tends to confound the identification of refugial areas and post-glacial colonization patterns in this group. In this study we used Genotyping-by-Sequencing (GBS) to reconstruct the phylogeographic history of a widespread carnivore, the red fox (Vulpes vulpes), in Europe by investigating broad-scale patterns of genomic variation, differentiation and admixture amongst contemporary populations. Using 15,003 single nucleotide polymorphisms (SNPs) from 524 individuals allowed us to identify the importance of refugial regions for the red fox in terms of endemism (e.g. Iberia) and sources of post-glacial re-expansion (e.g. Carpathians and Balkans) across northern regions of the continent. In addition, we tested multiple post-glacial re-colonization scenarios of previously glaciated regions during the Last Glacial Maximum using an Approximate Bayesian Computation (ABC) approach. We identified the role of ancient and temporary land-bridges in the colonization of Scandinavia and the British Isles, with a natural colonization of Ireland deemed more likely than an ancient human-mediated introduction as has previously been proposed. Using genome-wide data has allowed us to tease apart broad-scale patterns of structure and diversity in a widespread carnivore in Europe that was not always evident from using more limited marker sets.

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Howling from the past: historical phylogeography and diversity losses in European grey wolves

Cited by 45 publications

References 76 publications

The Sicilian wolf: Genetic identity of a recently extinct insular population

The Sicilian wolf: Genetic identity of a recently extinct insular population

Evolutionary impacts differ between two exploited populations of northern bottlenose whale (Hyperoodon ampullatus)

Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe

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