For many papillomaviruses, the viral protein E2 tethers the viral genome to the host mitotic chromosomes to ensure persistent, long-term maintenance of the genome during cell division. Our previous studies of E2 proteins from different genera of papillomaviruses have shown that they bind to different regions of the host chromosomes during mitosis. For example, bovine papillomavirus type 1 (BPV-1) E2 binds to all chromosomes as small speckles in complex with the cellular protein Brd4. In contrast, the human papillomavirus type 8 (HPV-8) E2 protein binds as large speckles at the pericentromeric regions of chromosomes. Here we show that these speckles do not contain Brd4, and unlike that of BPV-1, the N-terminal Brd4-interacting domain of HPV-8 E2 is not required for chromosome binding. In contrast to BPV-1 E2, the HPV-8 E2 protein targets the short arms of acrocentric mitotic chromosomes. Furthermore, the E2 protein interacts with the repeated ribosomal DNA genes found in this location and colocalizes with UBF, the RNA polymerase I transcription factor. Therefore, HPV-8 E2 genome tethering occurs by a Brd4-independent mechanism through a novel interaction with specific regions of mitotic chromosomes. Thus, a wide range of viruses have adopted the strategy of linking their genomes to host chromosomes, but individual viruses use different chromosomal targets. Characterization of these targets will enable the development of antiviral therapies to eliminate the viral genomes from infected cells.Papillomaviruses infect the basal layer of stratified epithelia. The viral genomes are stably maintained in the nuclei of the dividing cells as low copy number, extrachromosomal elements for many years. Error-free replication and equal distribution of the replicated copies of the viral DNA to the dividing cells are key to the persistence of papillomavirus infection. The mechanism of viral genome partitioning is different from that of host chromosomes, as the viral DNA does not possess any sequence equivalent to the centromere to utilize the mitotic segregation machinery of the host. Instead, E2, a multifunctional viral protein, attaches the viral DNA to the host chromosomes (15,21,34). As the host cell chromosomes are divided equally into daughter cells during mitotic division, the viral DNA is passively segregated by being tethered to the host chromosomes. Chromosomal tethering mediated by a virus-encoded protein is a common tactic for maintaining the genomes of other persistent viruses. Gammaherpesviruses such as Epstein-Barr virus and Kaposi's sarcoma-associated herpesvirus use this strategy, which is mediated by the EBNA-1 and LANA proteins, respectively (reviewed in reference 23).Among the papillomaviruses, bovine papillomavirus type 1 (BPV-1) is best studied for chromosomal segregation. The multifunctional viral protein E2 has been shown to play an important role in this process. Both the BPV-1 E2 protein and viral genomes are localized on mitotic chromosomes as small speckles on the arms of all chromosomes, in complex wi...