Eukaryotic tRNA genes are controlled by proximal and downstream elements that direct transcription by RNA polymerase (pol) III. Transcription factors (TFs) that reside near the initiation site are related in Saccharomyces cerevisiae and humans, while those that reside at or downstream of the B box share no recognizable sequence relatedness. Human TFIIIC is a transcriptional regulator that exhibits no homology to S. cerevisiae sequences on its own. We cloned an essential Schizosaccharomyces pombe gene that encodes a protein, Sfc6p, with homology to the S. cerevisiae TFIIIC subunit, TFC6p, that extends to human TFIIIC. We also isolated and cloned S. pombe homologs of three other TFIIIC subunits, Sfc3p, Sfc4p, and Sfc1p, the latter two of which are conserved from S. cerevisiae to humans, while the former shares homology with the S. cerevisiae B boxbinding homolog only. Sfc6p is a component of a sequence-specific DNA-binding complex that also contains the B box-binding homolog, Sfc3p. Immunoprecipitation of Sfc3p further revealed that Sfc1p, Sfc3p, Sfc4p, and Sfc6p are associated in vivo and that the isolated Sfc3p complex is active for pol III-mediated transcription of a S. pombe tRNA gene in vitro. These results establish a link between the downstream pol III TFs in yeast and humans.
RNA polymerase (pol)1 III is a multisubunit enzyme that is directed to initiate RNA synthesis by transcription factors (TFs) that bind to gene promoter elements. Pol III transcripts comprise a large variety of small nuclear and cytoplasmic RNAs (1). While there is substantial diversity in the promoter structures of pol III-transcribed genes, three major classes are responsible for the synthesis of the more abundant of the cellular pol III transcripts, tRNAs, 5 S rRNA, and U6 snRNA (2). Each of these represent one of three distinct gene classes that utilize a characteristic promoter structure and a specific set of TFs (3). 5 S rRNA genes comprise class I and contain a principal internal promoter that is a binding site for TFIIIA. Class 3 genes utilize upstream TATA elements and, in metazoans, an additional upstream element that binds a distinct multisubunit TF (4). Class 2 is represented by tRNA genes, which are driven by an internal split promoter composed of proximal box A and distal box B elements. In contrast to the diversity of promoter structures, the termination signal for polymerase III transcription is the run of dT residues found at the 3Ј-ends of pol III-transcribed genes (reviewed in Ref. 5).The A box usually begins 10 -15 base pairs (bp) downstream of the start site of transcription, and the B box is further downstream, the distance depending on the particular tRNA gene. The terminator is the most 3Ј element, usually found within 20 bp of the B box (6). The multisubunit TF IIIC spans the length of tRNA genes, binding to the internal promoter and terminator regions (3). The largest subunit of TFIIIC plays a central role in initiation by recognizing the B box promoter and orienting its associated subunits along the DNA. Th...