“…Here, we examined locus-specific differentiation and introgression using reduced-representation sequencing data from a bimodal howler monkey hybrid zone (Alouatta palliata × Alouatta pigra) (Cortés-Ortiz et al, 2015) and from allopatric parental populations to test predictions about the forms of selection acting on loci associated with reproductive isolation. The parental species diverged ~3 Ma (Cortés-Ortiz et al, 2003) and have many important differences in their morphology (Kelaita, Dias, Aguilar-Cucurachi, Canales-Espinosa, & Cortés-Ortiz, 2011;Smith, 1970), cytogenetics (Steinberg et al, 2008), social systems (Chapman & Balcomb, 1998;Ho et al, 2014) and loud vocalizations (Bergman et al, 2016).…”