25Early disease diagnosis is key for the effective treatment of diseases. It relies on the 26 identification of biomarkers and morphological inspection of organs and tissues.
27Histopathological analysis of human biopsies is the gold standard to diagnose tissue 28 alterations. However, this approach has low resolution and overlooks 3D structural changes 29 that are consequence of functional alterations. Here, we applied multiphoton imaging, 3D 30 digital reconstructions and computational simulations to generate spatially-resolved 31 geometrical and functional models of human liver tissue at different stages of non-alcoholic 32 fatty liver disease (NAFLD). We identified a set of new morphometric cellular parameters 33 correlated with disease progression. Moreover, we found profound topological defects in the 34 3D bile canaliculi (BC) network. Personalized biliary fluid dynamic simulations predicted an 35 increased pericentral biliary pressure and zonated cholestasis, consistent with elevated 36 cholestatic biomarkers in patients' sera. Our spatially-resolved models of human liver tissue 37 can contribute to high-definition medicine by identifying quantitative multi-parametric cellular 38 and tissue signatures to define disease progression and provide new insights into NAFLD 39 pathophysiology.
42High definition medicine is emerging as an integrated approach to profile and restore 43 the health of an individual using a pipeline of multi-parametric analytical and therapeutic 44 technologies 1 . High-definition medicine relies on large data sets, e.g. genomics, 45 metabolomics, to characterize human health at the molecular level. It also relies on imaging, 46 image analysis and computational modelling approaches to identify structural and functional 47 abnormalities in organs and tissues associated with a disease state. Histology has been 48 classically used to characterize tissue structure and remains the method of choice to 49 describe and monitor a large variety of pathologies 2 . However, this technique has several 50 disadvantages, e.g. it is subjective (depends on the pathologist's skills), is often semi-51 quantitative and provides only two-dimensional (2D) information, i.e. does not account for 52 the three-dimensional (3D) complexity of tissues 3 . In recent years, an increasing number of 53 studies have highlighted the importance of considering 3D information for the 54 histopathological examination of tissues 4-7 . This is particularly crucial for the analysis of 3D 55 structures. The liver is a pertinent example of an organ with a complex 3D tissue 56 organization 8 . It consists of functional units, the liver lobule 9,10 , containing two intertwined 57 networks, the sinusoids for blood flow and the bile canaliculi (BC) for bile secretion and flux 9 . 58 Sinusoids and BC run antiparallel along the central vein (CV)-portal vein (PV) axis. The 59 hepatocytes are the major parenchymal cells and display a peculiar and unique type of cell 60 polarity distinct from that of simple epithelia 11 . Whereas in epit...