Genome integrity is continuously threatened by external stresses and endogenous hazards such as DNA replication errors and reactive oxygen species. The DNA damage checkpoint in metazoans ensures genome integrity by delaying cell-cycle progression to repair damaged DNA or by inducing apoptosis. ATM and ATR (ataxia-telangiectasia-mutated and -Rad3-related) are sensor kinases that relay the damage signal to transducer kinases Chk1 and Chk2 and to downstream cell-cycle regulators. Plants also possess ATM and ATR orthologs but lack obvious counterparts of downstream regulators. Instead, the plant-specific transcription factor SOG1 (suppressor of gamma response 1) plays a central role in the transmission of signals from both ATM and ATR kinases. Here we show that in Arabidopsis, endoreduplication is induced by DNA double-strand breaks (DSBs), but not directly by DNA replication stress. When root or sepal cells, or undifferentiated suspension cells, were treated with DSB inducers, they displayed increased cell size and DNA ploidy. We found that the ATM-SOG1 and ATR-SOG1 pathways both transmit DSB-derived signals and that either one suffices for endocycle induction. These signaling pathways govern the expression of distinct sets of cell-cycle regulators, such as cyclin-dependent kinases and their suppressors. Our results demonstrate that Arabidopsis undergoes a programmed endoreduplicative response to DSBs, suggesting that plants have evolved a distinct strategy to sustain growth under genotoxic stress.root meristem | protein degradation D amaged DNA needs to be repaired to prevent loss or incorrect transmission of genetic information. Eukaryotic DNA damage checkpoints delay or arrest the cell cycle to provide time for DNA repair before the cell enters a new round of DNA replication or mitosis (1). In metazoans, ATM and ATR (ataxia-telangiectasia-mutated and -Rad3-related) are sensor kinases that play a crucial role in the checkpoint system. ATM specifically responds to DNA double-strand breaks (DSBs), and ATR primarily senses replication stress caused by a persistent block of replication fork progression. ATM deficiency confers hypersensitivity to ionizing radiation (2), whereas ATR knockout mutation is lethal (3, 4), and dominant-negative cell lines display hypersensitivity to UVB light, gamma radiation, hydroxyurea (HU), and aphidicolin (5, 6). ATM and ATR relay the damage signal to transducer kinases Chk2 and Chk1, respectively, which then amplify the signal and regulate an overlapping set of substrates that trigger cell-cycle arrest and DNA repair (1). The transcription factor p53, cyclin-dependent kinase (CDK) inhibitor p21, and Cdc25 phosphatase are downstream regulators that control cell-cycle arrest in response to DNA damage.Comparative sequence analyses among plants, yeast, and animals indicate that some of the factors involved in DNA damage checkpoint and DSB repair systems are conserved between vertebrates and plants (7). Plants also possess ATM and ATR orthologs, and knockout mutants show similar phenotypes...