dRuminococcus gnavus belongs to the 57 most common species present in 90% of individuals. Previously, we identified an ␣-galactosidase (Aga1) belonging to glycoside hydrolase (GH) family 36 from R. gnavus E1 (M. Aguilera, H. Rakotoarivonina, A. Brutus, T. Giardina, G. Simon, and M. Fons, Res. Microbiol. 163:14 -21, 2012). Here, we identified a novel GH36-encoding gene from the same strain and termed it aga2. Although aga1 showed a very simple genetic organization, aga2 is part of an operon of unique structure, including genes putatively encoding a regulator, a GH13, two phosphotransferase system (PTS) sequences, and a GH32, probably involved in extracellular and intracellular sucrose assimilation. The 727-amino-acid (aa) deduced Aga2 protein shares approximately 45% identity with Aga1. Both Aga1 and Aga2 expressed in Escherichia coli showed strict specificity for ␣-linked galactose. Both enzymes were active on natural substrates such as melibiose, raffinose, and stachyose. Aga1 and Aga2 occurred as homotetramers in solution, as shown by analytical ultracentrifugation. Modeling of Aga1 and Aga2 identified key amino acids which may be involved in substrate specificity and stabilization of the ␣-linked galactoside substrates within the active site. Furthermore, Aga1 and Aga2 were both able to perform transglycosylation reactions with ␣-(1,6) regioselectivity, leading to the formation of product structures up to [Hex] 12 and [Hex] 8 , respectively. We suggest that Aga1 and Aga2 play essential roles in the metabolism of dietary oligosaccharides and could be used for the design of galacto-oligosaccharide (GOS) prebiotics, known to selectively modulate the beneficial gut microbiota.T he human gut is colonized by a complex, diverse, and dynamic community of microbes that continuously interact with the host (30). The majority belongs to only four bacterial divisions, Firmicutes, Bacteroidetes, Proteobacteria, and Actinobacteria, whereas other minor taxonomic divisions are quite diverse (19,43,62). Several ecological studies have shown that microbial symbionts have adapted to maximize metabolic access to a wide variety of dietary and host-derived carbohydrates (glycans), and competition for these nutrients is considered a major factor shaping the structure-function of the microbiota (33). Recently, a metagenomic analysis of gut microbial communities in humans proposed three predominant variants, or "enterotypes," dominated by Bacteroides, Prevotella, and Ruminococcus (3). A controlledfeeding study showed that enterotype partitioning associates with long-term diets (61). Furthermore, the ability to selectively use prebiotics carbohydrates, ranging from oligosaccharides to polysaccharides, provides a competitive advantage over other bacteria in this ecosystem (28). These studies highlight the importance of understanding precisely how nutrient metabolism serves to maintain a symbiotic relationship between gut bacteria and the host. The genomes of gut bacteria encode a wide array of carbohydrateactive enzymes (CAZymes) that d...