G1 is a crucial phase of cell growth because the decision to begin another mitotic cycle is made during this period. Occurrence of DNA damage in G 1 poses a particular challenge, because replication of damaged DNA can be deleterious and because no sister chromatid is present to provide a template for recombinational repair. We therefore have studied the response of Schizosaccharomyces pombe cells to UV irradiation in early G 1 phase. We find that irradiation results in delayed progression through G 1, as manifested most critically in the delayed formation of the pre-replication complex. This delay does not have the molecular hallmarks of known checkpoint responses: it is independent of the checkpoint proteins Rad3, Cds1, and Chk1 and does not elicit inhibitory phosphorylation of Cdc2. Irradiated cells eventually progress into S phase and arrest in early S by a rad3-and cds1-dependent mechanism, most likely the intra-S checkpoint. Caffeine alleviates both the intra-G 1-and intra-S-phase delays. We suggest that intra-G 1 delay may be widely conserved and discuss significance and possible mechanisms.W hen supplied with appropriate nutrients, all growing cells, from simple prokaryote to complex eukaryote, go through an obligatory cell cycle consisting of alternating periods of DNA replication (S phase), segregation of the chromosomes and nuclear division (mitosis), and cell division. The order of events is crucial and is monitored by molecular mechanisms termed checkpoints. A checkpoint inhibits or delays an event of the cell cycle if an upstream event has not been completed properly or if the DNA is damaged (1).Several different DNA damage and DNA replication checkpoints have been identified and characterized in the fission yeast Schizosaccharomyces pombe (2, 3). They include mechanisms to inhibit mitosis when the DNA is damaged (the G 2 ͞M checkpoint) or when S phase has not been completed (the S͞M checkpoint), as well as a mechanism to inhibit ongoing DNA replication when the DNA is damaged (the intra-S checkpoint). These three checkpoints have several molecular determinants in common. First, all of them depend on a set of genes called the checkpoint rad genes. Second, they all are mediated by one or both of two protein kinases, Chk1 and Cds1. Third, a downstream target for all of them is the Cdc2 kinase, which is kept phosphorylated on tyrosine-15 and, thus, is inactivated when the checkpoints are induced.The Cds1 and Chk1 protein kinases are central players in all of the DNA damage and replication checkpoints characterized in S. pombe, but they have different functions in the different checkpoints. The S͞M and intra-S checkpoints both depend on Cds1, which is activated only in S phase (4, 5). The Cds1 protein is phosphorylated by a process dependent on Rad3 and Mrc1 (6, 7). Chk1 is phosphorylated after DNA damage in late S or in G 2 phase in a process dependent on , and this phosphorylation has been taken as a diagnostic sign of checkpoint activation. In human cells, the Rad3 homolog ATR binds and phosphorylate...