“…Epidemiological surveys of B. pertussis strains on the genome and gene levels have found recent isolates distinct from vaccine strains or isolates circulating before the 1990s in many countries using different typing methods (5,8,13,14,18,19,29,30,43). PFGE, multilocus sequence typing, and multilocus variable-number tandem repeat analysis have found some B. pertussis lineages to be more successful at disseminating and/or related to the increase of incidence in some countries (2,3,12,19,25,38). Among many available methodologies capable of tracking genetic differences among isolates, PFGE has been the chosen reference method for epidemiological surveys (2,31), since it is the most discriminatory (4).…”