Word count abstract: 247 20 21 Word count importance: 132 22 23 Word count main text: 4113 24 25 26 51 species, Culex pipiens and Culex torrentium, sampled from northern Europe. Our analysis 52 revealed extensive viral diversity, including 28 novel viruses, and was comparable to the 53 levels of diversity found in other temperate and tropical regions globally. Importantly, as well 54 as harbouring RNA viruses that are closely related to other mosquito-derived viruses sampled 55 in diverse global locations, we also described a number of viruses that are unique to specific 56 sampling locations in Sweden. Hence, these data showed that geographical factors can play an 57 important role in shaping virome structure even at local scales. 58 59 60 The mosquito (Diptera; Culicidae) genus Culex comprises more than a thousand species, with 61 representatives found globally (1). Culex species are vectors of a number of important 62 pathogens including West Nile virus (WNV) (Flaviviridae), Japanese encephalitis virus (JEV) 63 (Flaviviridae) and Sindbis virus (SINV) (Togaviridae), as well as a variety of nematodes (1-64 3). One of the most widespread Culex species is the Northern House mosquito, Cx. pipiens, 65 that is distributed across the northern hemisphere. In Europe and the Middle East it occurs 66 together with Cx. torrentium, another Culex species with females and larvae that are 67 morphologically identical to Cx. pipiens. These two species have overlapping distributions 68 and share larval habitats. However, Cx. torrentium dominates in northern Europe while Cx. 69 pipiens is more abundant in the south (4). Both species are vectors for a number of bird-70 associated viruses that can cause disease in Europe; for example, WNV, that may cause a 71 febrile disease with encephalitis, and SINV that may result in long lasting arthritis (2, 5). Cx. 72 pipiens is one of the most common WNV vectors in both southern Europe and North 73 America, and Cx. torrentium is the main vector of SINV in northern Europe (2, 6). Infections 74with these pathogenic viruses occur in late summer when the viral prevalence accumulates in 75 passerine birds, the vertebrate hosts of both of these viruses (7, 8). Despite their importance as 76 vectors, little is known about the detailed biology of Cx. pipiens and Cx. torrentium due to the 77 difficulties in species identification, which can only be reliably achieved through molecular 78 means. Much of the biology of these species, such as their larval habitat and feeding 79 preferences, is considered similar. However, one significant difference between the two 80 species is that while Cx. pipiens harbours a high prevalence of the intracellular bacteria 81 Wolbachia pipientis, it is seemingly absent in Cx. torrentium (9). 82 83 In recent years, studies utilizing RNA-sequencing (RNA-Seq, or 'meta-transcriptomics') have 84 revealed an enormous RNA virus diversity in both vertebrates and invertebrates (10, 11). 85 Mosquitoes are of particular interest as many are well-known vectors of...