The archetypal genomic arrangement of vertebrate Dlx genes is as three bigene clusters (Dlx1/2, Dlx3/4, Dlx5/6). Phylogenetic sequence analysis of mouse and zebrafish Dlx clusters supports the notion that the Dlx3/4 cluster is more derived and the absence of expression of either Dlx3 or Dlx4 in the central nervous system, as reported to date, is consistent with this. Together, these observations have prompted a model in which cis-regulatory elements, responsible for directing Dlx gene transcription in the forebrain, were lost from the Dlx3/4 bigene cluster prior to the divergence of tetrapods from fish. Here, we describe Dlx3 expression in the forebrain of chicken embryos; this constitutes the first documented evidence of expression of either Dlx3 or Dlx4 in the central nervous system of a vertebrate. Our observations have implications for models of the evolutionary history of the Dlx gene family, for the genomic organization of Dlx genes in birds and for functional redundancy of Dlx gene function during avian forebrain development.
KEY WORDS: Dlx3, transcription factor, chicken embryo, ventral forebrain, neurogenesisThe homeobox gene family that encodes Dlx transcription factors represents an example of a common paradigm in genome evolution wherein an archetypal gene (e.g. Distal-less) in a euchordate ancestor was serially duplicated over evolutionary time to give rise to a family of homologous genes in living vertebrates (e.g. Dlx1-Dlx6 in mammals). In extant mammals, the six Dlx genes are arranged as three linked pairs (or bigene clusters) on different chromosomes within syntenic regions that include three of the four Hox clusters (McGuinness et al., 1996, Nakamura et al., 1996, Liu et al., 1997. Zebrafish also have this genomic organization of six Dlx orthologues in three bigene clusters, although further large-scale duplications have left Danio rerio with an additional orphan paralogue for each of dlx2 and dlx4 , Ellies et al., 1997. Of the mammalian genomic loci cloned thus far, the Dlx intergenic region ranges from a minimum of 8.3 kb in the mouse Dlx1/2 cluster (McGuinness et al., 1996) to a maximum of 17.6 kb in the human DLX3/4 cluster . Intergenic regions for the genomically compact pufferfish Takifugu rubripes and Spheroides nephalus are smaller at 3-5 kb (Ghanem et al., 2003), with Danio rerio having intermediate sizes of 3.5 -7.3 kb (Ellies et al., 1997). Despite the significant variation in their size, several highly conserved non-coding sequence elements have been identified in the intergenic regions of Dlx bigene clusters and have been shown to behave as tissue-specific enhancers , Sumiyama et al., 2002, Ghanem et al., 2003 Int. J. Dev. Biol. 50: 71-75 (2006) , Park et al., 2004. Intergenic enhancer sharing therefore accounts for much of the overlap in expression of members of a Dlx bigene cluster.Phylogenetic sequence analysis of mouse and zebrafish Dlx clusters supports the notion that the Dlx3/4 cluster is more derived . Consistent with this, Dlx1, -2, -5 and -6 show more comm...