The med-1 and med-2 genes encode a pair of essentially identical GATA factor-related transcription factors that have been proposed to be necessary for specification of the C. elegans endoderm (intestine or E lineage) as well as part of the C. elegans mesoderm. med-1 and med-2 are proposed to be the direct downstream targets and the principal effectors of the maternally provided SKN-1 transcription factor; med-1 and med-2 would thus occupy the pivotal interface between maternal and zygotic control of gene expression. The conclusion that med-1 and med-2 are necessary for C. elegans endoderm specification was based on a partially penetrant (50%) loss of endoderm markers produced by RNA-mediated interference (RNAi). To determine whether this partial penetrance reflects: (i) inefficient RNAi against early zygotic transcripts, (ii) experimental uncertainty in the expected level of endoderm loss in skn-1 nulls, or (iii) additional redundancy in the pathway of endoderm specification, we constructed worm strains that segregate embryos lacking both the med-1 gene (because of a gene-specific deletion) and the med-2 gene (using either of two chromosomal deficiencies). Contrary to expectations, we observe that only 3-20% of med-2(ÿ); med-1(ÿ) embryos do not express markers of endoderm differentiation. Furthermore, we found no evidence for a maternal contribution of the med genes to endoderm specification. We conclude that the major pathway(s) for endoderm specification in C. elegans must be independent of the med-1 and med-2 genes. T HE Caenorhabditis elegans endoderm (intestine or E lineage) is clonally derived from a single cell, the E cell, in the eight-cell embryo (Sulston et al. 1983). The early endoderm is one of the few C. elegans lineages for which a plausible specification pathway has been proposed in molecular detail, beginning with maternally provided transcription factors, progressing through several waves of zygotically produced transcription factors, and ending with gene products that function in the terminally differentiated intestine (see review by Maduro and Rothman 2002; see also Baugh et al. 2003Baugh et al. , 2005Robertson et al. 2004). Figure 1 summarizes the regulatory cascade proposed for specification of the C. elegans endoderm. The maternally provided b-ZIP-like transcription factor SKN-1 is essential for correct specification of the fate of the EMS blastomere of the four-cell embryo (Bowerman et al. 1992(Bowerman et al. , 1993. Within the EMS cell, SKN-1 is proposed to directly activate the zygotic expression of two genes called med-1 and med-2, which encode zinc-finger proteins related to GATA-type transcription factors but with atypical binding sites (Maduro et al. 2001;Maduro and Rothman 2002;Broitman-Maduro et al. 2005).These two small intronless genes are 98% identical and, for convenience, are often referred to simply as the med genes (mesendoderm-determining); they are the principal subjects of this article. The med genes are proposed to specify both the C. elegans endoderm and that p...