The soil-borne pathogen Rhizoctonia solani infects a broad range of plants worldwide and is responsible for significant crop losses. Rhizoctonia solani AG3-PT attacks germinating potato sprouts underground while molecular responses during interaction are unknown. To gain insights into processes induced in the fungus especially at early stage of interaction, transcriptional activity was compared between growth of mycelium in liquid culture and the growing fungus in interaction with potato sprouts using RNA-sequencing. Genes coding for enzymes with diverse hydrolase activities were strongly differentially expressed, however with remarkably dissimilar time response. While at 3 dpi, expression of genes coding for peptidases was predominantly induced, strongest induction was found for genes encoding hydrolases acting on cell wall components at 8 dpi. Several genes with unknown function were also differentially expressed, thus assuming putative roles as effectors to support host colonization. In summary, the presented analysis characterizes the necrotrophic lifestyle of R. solani AG3-PT during early interaction with its host. The soil-borne fungus Rhizoctonia solani (J. G. Kühn) [teleomorph Thanatephorus cucumeris (A. B. Frank) Donk] belongs to the phylum Basidiomycota. R. solani is a soil-borne plant pathogenic fungus with worldwide distribution and infects many economically important crops like rice, soybean, potato, maize, sugar beet, cabbage, tomato, and lettuce 1. R. solani is a species complex of various groups called anastomosis groups (AG), some of which are subdivided into additional subgroups 2,3. Hyphae of isolates belonging to the same AG are able to anastomose. In total, 13 different AGs of R. solani have been described with their subgroups differing in morphological and genetic characteristics 4,5. Members of the different AGs and the various subgroups show a distinct degree in host specificity 6,7. Diseases on potato caused by R. solani occur in all areas, where potatoes are grown and affect the qualitative and quantitative yield of potato tubers. About 30% of tuber yield loss has been reported 8. Rhizoctonia solani AG3 was found to be the predominant AG associated with potato 9-13 , and the so-called R. solani AG3-potato type (PT) was developed 14. Infection of potato by R. solani AG3-PT may result in the characteristic disease symptoms of stem canker and black scurf 15. Shortly after planting, necroses on germinating sprouts are the typical symptoms of stem canker, and results in late emergence of potato plants in the field, lower numbers of stems, shorter stolons and deformation of progeny tubers 16. It is postulated that necrotic lesions on the stolons disrupt the delivery of photosynthates leading to this characteristic tuber phenotype 17. Black scurf symptoms appear later in the season, when sclerotia start to cover ripening potato tubers 8. These tuber-borne R. solani inocula can be the main source of primary infection causing stem canker symptoms of below-ground plant tissue of the