Drought is a serious problem, which causes heavy yield losses for rice. Heat-shock factors (HSFs) had been implicated in tolerance to drought and high temperature. However, there has not been much functional characterization and mechanism clarification in rice. Previously, we found an HSF gene, OsHSFA3, was highly related with drought tolerance after screening from 10,000 different samples. Herein, we cloned the OsHSFA3 from rice and overexpressed it in Arabidopsis thaliana to study its regulatory mechanism of drought tolerance. Phenotypic and physiological assays of the transgenic Arabidopsis lines showed that overexpression of OsHSFA3 confers drought tolerance by reducing water loss and reactive oxygen species (ROS) levels, whereas it increases abscisic acid (ABA) levels. However, enzymatic antioxidants such as activity levels of superoxide dismutase, peroxidase and catalase were not significantly different between wild type and transgenic lines. Instead, we observed a significant increase in polyamine content, which was correlated with increased AtADC1, AtADC2, SPDS1 and SPMS expression levels. In silico and in vivo analyses confirmed that OsHSFA3 is a nuclear-localized gene. In addition, OsHSFA3 can bind to the promoter of AtADC1 and OsADC via a yeast one-hybrid assay. Overall, this study reveals that OsHSFA3 improves drought tolerance in Arabidopsis not only by increasing ABA levels, but also by modulating polyamine levels to maintain ROS homeostasis, therefore it could be a strong candidate to develop drought-tolerant rice cultivars.Since plants cannot move from one place to other to avoid the harmful effects of stresses, they adopt various mechanisms for stress tolerance. The antioxidant defense system is one of the major tolerance mechanisms for ROS scavenging under abiotic stresses [14]. Enzymatic antioxidants including superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT) are key ROS-scavenging enzymes [15,16]. Similarly, polyamines are vital plant metabolites that serve as important ROS scavengers and also induce stomatal closure under drought stress [17,18]. The enzyme arginine decarboxylase (ADC) catalyzes arginine to agmatine, which is the precursor of putrescine and higher polyamines (PAs), such as spermidine and spermine. Several genes have been reported to control the production of polyamines in plants [18,19]. In Arabidopsis thaliana, ADC only has two paralogues, AtADC1 and AtADC2 [20]. In rice, several genes regulate the biosynthesis of polyamines in a collective way and contribute to drought tolerance [21,22]. Thus, exploiting such tolerance mechanisms provide an amazing option to cope with drought stress in rice.Transcription factors (TFs) are well-known for their role in abiotic stress tolerance in plants [8,23]. Among the different TF families, heat shock factors (HSFs), WRKY-motif containing proteins (WRKY), myeloblastosis (MYB) and APETALA2/ethylene response factor (AP2/ERF) families are the most promising for their role in drought and other abiotic stress tolerance [18,[24][25]...