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              <scp>T</scp>
              hiohalorhabdus
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Sorokin, Dimitry Y.; Merkel, Alexander Y.; Muyzer, Gerard

doi:10.1002/9781118960608.gbm01940

Cited by 4 publications

(1 citation statement)

References 12 publications

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“…Piscirickettsiaceae are known to be adapted to the oxic/anoxic interface and capable of sulfide oxidation (Borin et al, 2009;Kappler et al, 2016). Similarly, Thiohalorhabdaceae (1%) use reduced sulfur compounds as an energy source and O 2 or NO 3 as electron acceptors (Sorokin et al, 2020).…”

Section: Suboxic Zonementioning

confidence: 99%

Niche partitioning of bacterial communities along the stratified water column in the Black Sea

et al. 2021

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The Black Sea is the largest semi‐closed permanently anoxic basin on our planet with long‐term stratification. The study aimed at describing the Black Sea microbial community taxonomic and functional composition within the range of depths spanning across oxic/anoxic interface, and to uncover the factors behind both their vertical and regional differentiation. 16S rRNA gene MiSeq sequencing was applied to get the data on microbial community taxonomy, and the PICRUSt pipeline was used to infer their functional profile. The normoxic zone was mainly inhabited by primary producers and heterotrophic prokaryotes (e.g., Flavobacteriaceae, Rhodobacteraceae, Synechococcaceae) whereas the euxinic zone—by heterotrophic and chemoautotrophic taxa (e.g., MSBL2, Piscirickettsiaceae, and Desulfarculaceae). Assimilatory sulfate reduction and oxygenic photosynthesis were prevailing within the normoxic zone, while the role of nitrification, dissimilatory sulfate reduction, and anoxygenic photosynthesis increased in the oxygen‐depleted water column part. Regional differentiation of microbial communities between the Ukrainian shelf and offshore zone was detected as well, yet it was significantly less pronounced than the vertical one. It is suggested that regional differentiation within a well‐oxygenated zone is driven by the difference in phytoplankton communities providing various substrates for the prokaryotes, whereas redox stratification is the main driving force behind microbial community vertical structure.

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Section: Suboxic Zonementioning

confidence: 99%

Niche partitioning of bacterial communities along the stratified water column in the Black Sea

et al. 2021

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Thiohalorhabdaceae fam. nov.

Sorokin

Merkel

2023

Bergey's Manual of Systematics of Archaea and Bacteria

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Thi.o.ha.lo.rhab.da.ce'ae N.L. fem. n. Thiohalorhabdus , the type genus of the family; L. fem. pl. n. suff.‐ aceae , ending to denote a family; N.L. fem. pl. n. Thiohalorhabdaceae , the Thiohalorhabdus family. Proteobacteria / Gammaproteobacteria / Thiohalorhabdales / Thiohalorhabdaceae fam. nov. The family Thiohalorhabdaceae incorporates facultatively anaerobic, chemolithoautotrophic, sulfur‐oxidizing bacteria from hypersaline habitats. They are extreme halophiles utilizing reduced sulfur compounds as energy sources with either O 2 or nitrate as the electron acceptor and assimilating CO 2 via the Calvin–Benson–Bassham cycle. The family is a member of the order Thiohalorhabdales in the Gammaproteobacteria, and it consists of a single genus Thiohalorhabdus . The family‐level status was established by phylogenomic analysis based on the Genome Taxonomy DataBase classification. DNA G + C content (%) : 68.9 (genome of the type strain). Type genus : Thiohalorhabdus Sorokin et al. 2008 VP .

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Thiohalorhabdales ord. nov.

Sorokin

Merkel

2023

Bergey's Manual of Systematics of Archaea and Bacteria

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Thi.o.ha.lo.rhab.dal'es N.L. fem. n. Thiohalorhabdus , the type genus of the order; L. fem. pl. n. suff. ‐ ales ending to denote an order; N.L. fem. pl. n. Thiohalorhabdales , order of the genus Thiohalorhabdus . Proteobacteria / Gammaproteobacteria / Thiohalorhabdales ord. nov. According to the phylogenomic analysis, the order Thiohalorhabdales forms a deeply branching phylogenetic lineage at the base of the Gammaproteobacteria . It consists of a single family Thiohalorhabdaceae and genus Thiohalorhabdus . The cultured members of the order are extremely halophilic, facultatively anaerobic (denitrifying), chemolithoautotrophic, sulfur‐oxidizing bacteria from hypersaline habitats with neutral pH. Type genus : Thiohalorhabdus Sorokin et al. 2008 VP .

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T hiohalorhabdus

Cited by 4 publications

References 12 publications

Niche partitioning of bacterial communities along the stratified water column in the Black Sea

Niche partitioning of bacterial communities along the stratified water column in the Black Sea

Thiohalorhabdaceae fam. nov.

Thiohalorhabdales ord. nov.

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