OBJECTIVE-Genetic polymorphisms of the transcription factor 7-like 2 (TCF7L2) gene is one of the few validated genetic variants with large effects on the risk of type 2 diabetes in the populations of European ancestry. In this study, we aimed to explore the effect of the TCF7L2 polymorphisms in a Han Chinese population.
RESEARCH DESIGN AND METHODS-We genotyped 20single nucleotide polymorphisms (SNPs) across the TCF7L2 gene in 1,520 unrelated subjects from a Han Chinese population in Taiwan. The associations of SNPs and haplotypes with type 2 diabetes and linkage disequilibrium (LD) structure of the TCF7L2 gene were analyzed.
RESULTS-The previously reported SNPs rs7903146 T-and rs12255372 T-alleles of the TCF7L2 gene were rare and were not associated with type 2 diabetes in a Chinese population, which may attribute to the low frequencies of these two SNPs. SNP rs290487 located in an LD block close to the 3Ј end of the gene was associated with type 2 diabetes (allele-specific P ϭ 0.0021; permuted P ϭ 0.03). The odds ratio was 1.36 for the CT genotype (95% CI 1.08Ϫ1.71; P ϭ 0.0063) and 1.51 for the CC genotype (1.10 Ϫ2.07; P ϭ 0.0085) compared with the TT genotype, corresponding to a population attributable risk fraction of 18.7%. The haplotypes composed of rs290487 were also significantly associated with type 2 diabetes (global P ϭ 0.012).CONCLUSIONS-We identified a novel risk-conferring genetic variant of TCF7L2 for type 2 diabetes in a Chinese population. Our data suggested that the TCF7L2 genetic polymorphisms are major determinants for risk of type 2 diabetes in the Chinese population. Diabetes 56: [2631][2632][2633][2634][2635][2636][2637] 2007 T ype 2 diabetes is a highly inheritable metabolic disorder of polygenetic nature (1). Although theoretical analyses emphasized the power of genetic association study in common multifactorial diseases, the search for genes that increase the risk of type 2 diabetes has not been very successful so far. The genes implicated in type 2 diabetes confer only modest effects on the disease risk and in many cases have yielded inconsistent results in replication efforts (2). Only few associations, notably the Pro12Ala polymorphism in the peroxisome proliferator-activated receptor (PPARG) gene (3), the Glu23Lys polymorphism in the KCNJ11 gene (4), and the genetic variants of calpain-10 genes (5), have been convincingly replicated.Recently, researchers seeking the cause of a previously identified linkage signal on chromosome 10q found a strong association of a common microsatellite (DG10S478) of the transcription factor 7-like 2 gene (TCF7L2) with type 2 diabetes in an Icelandic sample, and the result was replicated in the samples from the U.S. and Denmark (6). DG10S478 is located within a well-defined linkage disequilibrium (LD) block of 92.1 kb that encompassed exon 4 and parts of two large flanking introns. Five single nucleotide polymorphisms (SNPs) (rs12255372, rs7903146, rs7901695, rs11196205, and rs7895340) within the LD block also showed similarly robust associations wit...