Toxoplasma gondii, an intracellular pathogen, has the potential to infect nearly every warm-blooded animal but rarely causes morbidity. The ability for the parasite to convert to the bradyzoite stage and live inside slow-growing cysts that can go unnoticed by the host immune system allows for parasite persistence for the life of the infected host. This intracellular survival likely necessitates host cell modulation, and tachyzoites are known to modify a number of signaling cascades within the host to promote parasite survival. Little is known, however, about how bradyzoites manipulate their host cell. Microarrays were used to profile the host transcriptional changes caused by bradyzoite infection and compared to those of tachyzoite-infected and uninfected hosts cells 2 days postinfection in vitro. Infection resulted in chemokine, cytokine, extracellular matrix, and growth factor transcript level changes. A small group of genes were specifically induced by tachyzoite infection, including granulocyte-macrophage colony-stimulating factor, BCL2-related protein A1, and interleukin-24. Bradyzoite infection yielded only about half the changes seen with tachyzoite infection, and those changes that did occur were almost all of lower magnitude than those induced by tachyzoites. These results suggest that bradyzoites lead a more stealthy existence within the infected host cell.Toxoplasma gondii is an extremely common parasite in humans and animals. Although sexual reproduction of this intracellular protozoan takes place only within felines, the intermediate hosts (many species of mammals and birds) support asexual reproduction consisting of two stages: tachyzoites and bradyzoites. Tachyzoites replicate rapidly, disseminate through the host, and cause tissue damage. Most are then cleared by the host immune response but not before some have converted into the bradyzoite stage. Bradyzoites replicate slowly, form a cyst within the host cell, and sustain a chronic infection for the life of the mammalian host. These bradyzoites latently persist and cause little pathology in a healthy host but, in an immunocompromised animal, they can reconvert into the tachyzoite stage and cause potentially fatal encephalitis.Toxoplasma has a variety of mechanisms to co-opt the host cell and evade host defenses, thereby promoting intracellular survival. In particular, a number of studies indicate that tachyzoites manipulate various signaling pathways within the host cell. For example, tachyzoite-infected cells have been shown to be resistant to the induction of apoptosis through the targeting of multiple, distinct steps (29,33,20,7). Toxoplasma tachyzoites also manipulate host cell NF-B signaling (32, 28), as well as mitogen-activated protein kinase signaling based on the fact that tachyzoite-infected macrophages are refractory to additional stimulation by lipopolysaccharide (26, 23). Recent research has also shown that tachyzoite proteins can be injected into the host cell upon invasion (19,21,30) and that at least one of these, a protein kinas...