2022
DOI: 10.1111/ppl.13736
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Identification and analysis of miRNAs‐lncRNAs‐mRNAs modules involved in stem‐elongation of deepwater rice (Oryza sativa L.)

Abstract: Deepwater is an abiotic stress that limits rice cultivation worldwide due to recurrent floods. The miRNAs and lncRNAs are two non‐coding RNAs emerging as major regulators of gene expressions under different abiotic stresses. However, the regulation of these two non‐coding RNAs under deepwater stress in rice is still unexplored. In this study, small RNA‐seq and RNA‐seq from internode and node tissues were analyzed to predict deepwater stress responsive miRNAs and lncRNAs, respectively. Additionally, a competiti… Show more

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Cited by 8 publications
(4 citation statements)
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“…Several ncRNAs have been detected in different plant species exposed to waterlogging or hypoxia conditions, such as Arabidopsis [194], maize [195,196], rice [197], Populus [198], Medicago [199], tomato [200], and cucumber [201,202], and some of them are shown in Table 1. For instance, in rice, nearly 291 and 58 miRNAs responsive to deepwater stress were discovered in the internode and node, respectively [197]. Further, degradome analysis predicted nearly 1586 and 744 targets cleaved by 230 and 53 miRNAs from the internode and nodes, respectively.…”
Section: Flooding/waterlogging/hypoxia Stressmentioning
confidence: 99%
“…Several ncRNAs have been detected in different plant species exposed to waterlogging or hypoxia conditions, such as Arabidopsis [194], maize [195,196], rice [197], Populus [198], Medicago [199], tomato [200], and cucumber [201,202], and some of them are shown in Table 1. For instance, in rice, nearly 291 and 58 miRNAs responsive to deepwater stress were discovered in the internode and node, respectively [197]. Further, degradome analysis predicted nearly 1586 and 744 targets cleaved by 230 and 53 miRNAs from the internode and nodes, respectively.…”
Section: Flooding/waterlogging/hypoxia Stressmentioning
confidence: 99%
“…Previously, miRNAs have been implicated in various aspects of plant growth and development, including several abiotic and biotic stresses (Gautam et al, 2017, 2021; Mishra et al, 2022, 2023; Mishra & Maurya, 2023; Panda et al, 2022; Singh et al, 2018, 2020, 2021; Vivek & Kumar, 2021; Yadav et al, 2020). In animal systems, it is well known that miRNAs regulate the accumulation of serotonin by modulating various genes (Arai et al, 2013; Kassan et al, 2022; McKibben & Dwivedi, 2021; Zhao et al, 2019).…”
Section: Mirnas As Important Regulators Of Serotonin Biosynthesismentioning
confidence: 99%
“…Recent evidence suggests that food alters gene expression and its regulators, such as miRNAs and transcription factors (TFs) [1][2][3]. miRNAs are a class of non-coding endogenous small RNAs that have been shown to have a crucial role in gene regulation and various biological processes, including plants and animals [4][5][6][7][8][9][10]. In addition, miRNAs can work cross-species and regulate the biological function both intracellularly and intercellularly [7,[11][12].…”
Section: Introductionmentioning
confidence: 99%