Antisense-oligonucleotides (ASOs) are a promising drug
modality
for the treatment of neurological disorders, but the currently established
route of administration via intrathecal delivery
is a major limitation to its broader clinical application. An attractive
alternative is the conjugation of the ASO to an antibody that facilitates
access to the central nervous system (CNS) after peripheral application
and target engagement at the blood–brain barrier, followed
by transcytosis. Here, we show that the diligent conjugate design
of Brainshuttle-ASO conjugates is the key to generating promising
delivery vehicles and thereby establishing design principles to create
optimized molecules with drug-like properties. An innovative site-specific
transglutaminase-based conjugation technology was chosen and optimized
in a stepwise process to identify the best-suited conjugation site,
tags, reaction conditions, and linker design. The overall conjugation
performance was found to be specifically governed by the choice of
buffer conditions and the structure of the linker. The combination
of the peptide tags YRYRQ and RYESK was chosen, showing high conjugation
fidelity. Elaborate conjugate analysis revealed that one leading differentiating
factor was hydrophobicity. The increase of hydrophobicity by the ASO
payload could be mitigated by the appropriate choice of conjugation
site and the heavy chain position 297 proved to be the most optimal.
Evaluating the properties of the linker suggested a short bicyclo[6.1.0]nonyne
(BCN) unit as best suited with regards to conjugation performance
and potency. Promising in vitro activity and in vivo pharmacokinetic behavior of optimized Brainshuttle-ASO
conjugates, based on a microtubule-associated protein tau (MAPT) targeting
oligonucleotide, suggest that such designs have the potential to serve
as a blueprint for peripherally delivered ASO-based drugs for the
CNS in the future.