DormantBacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognize germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. We sought to substantiate this putative function of the GerA family proteins by characterizing spore germination in a mutant strain that contained deletions at all known gerA-like loci. As expected, the mutant spores germinated very poorly in a variety of rich media. In contrast, they germinated like wild-type spores in a chemical germinant, a 1-1 chelate of Ca 2؉ and dipicolinic acid (DPA). These observations showed that proteins encoded by gerA family members are required for nutrient-induced germination but not for chemical-triggered germination, supporting the hypothesis that the GerA family encodes receptors for nutrient germinants. Further characterization of Ca 2؉ -DPA-induced germination showed that the effect of Ca 2؉ -DPA on spore germination was saturated at 60 mM and had a K m of 30 mM. We also found that decoating spores abolished their ability to germinate in Ca 2؉ -DPA but not in nutrient germinants, indicating that Ca 2؉ -DPA and nutrient germinants probably act through parallel arms of the germination pathway.Bacillus subtilis cells form metabolically dormant spores when starved for one or more nutrients (7). In the presence of particular nutrients, called germinants, the spores break dormancy through the process of germination and, after going through outgrowth, eventually resume vegetative growth (15). It is currently believed that spores recognize nutrient germinants through receptor proteins encoded by three loci (gerA, gerB, and gerK). This hypothesis is based on genetic studies which showed that spores containing mutations at any one of these loci fail to germinate in response to specific germinants (14,15,19). Further support for the receptor hypothesis came from the finding that dominant mutations in gerB allow spores to germinate in novel germinants (17). The gerA, gerB, and gerK loci are each tricistronic operons encoding proteins which share significant homology across the three operons (4,12,25). Two of the three proteins encoded by each operon are predicted to be membrane proteins, which is again consistent with the idea that they encode germinant receptors (4, 25). The proteins, however, have been refractory to in vitro biochemical manipulation, and thus the receptor hypothesis remains untested.Recent sequencing and genetic studies have identified members of the gerA family of operons in other endospore-forming bacteria including Bacillus cereus (3), Bacillus anthracis (9), Bacillus halodurans (23), Clostridium acetobutylicum (Genome Therapeutics Corporation), Clostridium difficile (Sanger Centre), and Clostridium pasteurianum (GenBank). However, thus far no gerA homologs have been identified in other bacterial groups. Furthermore, the B. cereus gerA operon homolog, gerI, has been implicated in inosine-induced spore germination in that ...