2016
DOI: 10.5713/ajas.16.0200
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Identification and characterization of novel single nucleotide polymorphism markers for fat deposition in muscle tissue of pigs using amplified fragment length polymorphism

Abstract: ObjectiveThis study was conducted to identify and evaluate the effective single nucleotide polymorphism (SNP) markers for fat deposition in the longissimus dorsi muscles of pigs using the amplified fragment length polymorphism (AFLP) approach.MethodsSixty-four selective primer combinations were used to identify the AFLP markers in the 20 highest- and 20 lowest-intramuscular fat (IMF) content phenotypes. Five AFLP fragments were converted into simple codominant SNP markers. These SNP markers were tested in term… Show more

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Cited by 2 publications
(2 citation statements)
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“…At the gene level, some molecules known to be related to FE were differentially abundant between FE-divergent pigs. For jejunum, these comprise, for instance, acid phosphatase 2 (ACP2; high FE Ͻ low FE), arginase 2 (ARG2; high FE Ͻ low FE), fibrillin 1 (FBN1; high FE Ͼ low FE), and guanylate cyclase 1 soluble subunit beta (GUCY1B3; high FE Ͼ low FE), which have been proposed as candidate genes for FE-related traits like average daily gain and back fat in livestock (13,14,55,59). Moreover, GUCY1B3 and lipase H (LIPH; high FE Ͻ low FE) were previously found to be differentially expressed in small intestine samples related to the intestinal development (44) and in the context of divergent feed intake (36), respectively.…”
Section: Resultsmentioning
confidence: 99%
“…At the gene level, some molecules known to be related to FE were differentially abundant between FE-divergent pigs. For jejunum, these comprise, for instance, acid phosphatase 2 (ACP2; high FE Ͻ low FE), arginase 2 (ARG2; high FE Ͻ low FE), fibrillin 1 (FBN1; high FE Ͼ low FE), and guanylate cyclase 1 soluble subunit beta (GUCY1B3; high FE Ͼ low FE), which have been proposed as candidate genes for FE-related traits like average daily gain and back fat in livestock (13,14,55,59). Moreover, GUCY1B3 and lipase H (LIPH; high FE Ͻ low FE) were previously found to be differentially expressed in small intestine samples related to the intestinal development (44) and in the context of divergent feed intake (36), respectively.…”
Section: Resultsmentioning
confidence: 99%
“…If scientists require black-bone chicken samples for the purposes of breeding or the study of genetics, they should select chickens who display a black color in most of their organs. Notably, some studies require that samples should possess extreme differences between two phenotypes [28]. This means that we need to include black-bone chickens that have mostly black colored organs in future research studies focusing on genetic selection or breeding.…”
mentioning
confidence: 99%