Identification and characterization of the RNA helicase activity of Japanese encephalitis virus NS3 protein

Utama, Andi; Shimizu, Hiroyuki; Morikawa, Shigeru; Hasebe, Futoshi; Morita, Kouichi; Igarashi, Akira; Hatsu, Masahiro; Takamizawa, Kazuhiro; Miyamura, Tatsuo

doi:10.1016/s0014-5793(99)01705-6

Cited by 65 publications

(47 citation statements)

References 33 publications

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“…Many related viruses including DFV [70,71], WNV [72], and JEV [73] have each been shown to unwind RNA in a 3′ to 5′ direction. Although nucleic acid stimulates ATP hydrolysis catalyzed by flavivirus, pestivirus, and hepacivirus helicases, different nucleic acids stimulate the enzymes differently.…”

Section: Flavivirus Helicases (Yfv Jev Dfv and Wnv Helicases)mentioning

confidence: 99%

Understanding Helicases as a Means of Virus Control

Frick¹,

Lam²

2006

CPD

103

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Helicases are promising antiviral drug targets because their enzymatic activities are essential for viral genome replication, transcription, and translation. Numerous potent inhibitors of helicases encoded by herpes simplex virus, severe acute respiratory syndrome coronavirus, hepatitis C virus, Japanese encephalitis virus, West Nile virus, and human papillomavirus have been recently reported in the scientific literature. Some inhibitors have also been shown to decrease viral replication in cell culture and animal models. This review discusses recent progress in understanding the structure and function of viral helicases to help clarify how these potential antiviral compounds function and to facilitate the design of better inhibitors. The above helicases and all related viral proteins are classified here based on their evolutionary and functional similarities, and the key mechanistic features of each group are noted. All helicases share a common motor function fueled by ATP hydrolysis, but differ in exactly how the motor moves the protein and its cargo on a nucleic acid chain. The helicase inhibitors discussed here influence rates of helicase-catalyzed DNA (or RNA) unwinding by preventing ATP hydrolysis, nucleic acid binding, nucleic acid release, or by disrupting the interaction of a helicase with a required cofactor.

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Section: Flavivirus Helicases (Yfv Jev Dfv and Wnv Helicases)mentioning

confidence: 99%

Understanding Helicases as a Means of Virus Control

Frick¹,

Lam²

2006

CPD

103

View full text Add to dashboard Cite

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“…However, the RNA helicases of mosquito-borne flaviviruses have not been well studied. The N-terminal-truncated DEN2 (16,20) and Japanese encephalitis virus NS3 (38) were expressed in E. coli and purified to demonstrate the RNA helicase activity. The RNA helicase activity of the full-length NS3, its RNA binding properties, the kinetic parameters or the influence of the protease cofactor, NS2BH domain, on the RNA helicase activity has not been previously studied to date.…”

mentioning

confidence: 99%

Modulation of the Nucleoside Triphosphatase/RNA Helicase and 5′-RNA Triphosphatase Activities of Dengue Virus Type 2 Nonstructural Protein 3 (NS3) by Interaction with NS5, the RNA-dependent RNA Polymerase

Yon

Teramoto

Mueller

et al. 2005

Journal of Biological Chemistry

126

120

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Dengue virus type 2 (DEN2), a member of the Flaviviridae family, is a re-emerging human pathogen of global significance. DEN2 nonstructural protein 3 (NS3) has a serine protease domain (NS3-pro) and requires the hydrophilic domain of NS2B (NS2BH) for activation. NS3 is also an RNA-stimulated nucleoside triphosphatase (NTPase)/RNA helicase and a 5-RNA triphosphatase (RTPase). In this study the first biochemical and kinetic properties of full-length NS3 (NS3 FL )-associated NTPase, RTPase, and RNA helicase are presented. The NS3 FL showed an enhanced RNA helicase activity compared with the NS3-pro-minus NS3, which was further enhanced by the presence of the NS2BH (NS2BH-NS3 FL ). An active protease catalytic triad is not required for the stimulatory effect, suggesting that the overall folding of the N-terminal protease domain contributes to this enhancement. In DEN2-infected mammalian cells, NS3 and NS5, the viral 5-RNA methyltransferase/ polymerase, exist as a complex. Therefore, the effect of NS5 on the NS3 NTPase activity was examined. The results show that NS5 stimulated the NS3 NTPase and RTPase activities. The NS5 stimulation of NS3 NTPase was dose-dependent until an equimolar ratio was reached. Moreover, the conserved motif, 184 RKRK, of NS3 played a crucial role in binding to RNA substrate and modulating the NTPase/RNA helicase and RTPase activities of NS3.The mosquito-borne Flavivirus genus, in the Flaviviridae family, includes human pathogens of global distribution and prevalence (for reviews, see Refs. 1-3), and Dengue viruses (DEN) 1 types 1-4 cause the most common infection encountered in humans (4). The diseases caused by DEN infections include from dengue fever, usually a self-limiting disease, to more severe forms, dengue hemorrhagic fever and dengue shock syndrome. These diseases pose a significant threat to humans living in DEN-infected Aedes aegypti mosquitoes endemic in areas that inhabit two-thirds of world population (5) DEN genome is a single-stranded RNA (10,723 nt in length for DEN2 New Guinea C strain used in this study (6)) of positive polarity. The viral RNA contains a long open reading frame coding for a polyprotein precursor. The polyprotein is processed into mature structural proteins, capsid (C), precursor membrane (prM), and envelope (E) and at least seven nonstructural proteins, NS1, NS2A, NS2B, NS3, NS4A, NS4B, and NS5, by cellular signal peptidase and viral serine protease in the endoplasmic reticulum (for review, see Ref. 7). The 5Ј-end of the viral RNA is modified by a type I cap structure (m 7 GpppN; 2Ј-OH moiety of N is methylated). DEN2 NS3 is a multifunctional protein of about 69 kDa. It includes a serine catalytic triad within the N-terminal 185 amino acid residues. The protease domain is activated by the hydrophobic protein NS2B which serves as a cofactor for the protease and forms a complex in the infected cells (8 -12). NS2B has three hydrophobic regions flanking a conserved hydrophilic domain. The hydrophilic domain of NS2B (NS2BH) alone is sufficient for protease act...

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“…These predictions were partially confirmed by verifying the enzymatic properties of a COOH-terminal segment of NS3 released from a membrane fraction of infected cells by subtilisin (54). Further information about the interactions and functions of the viral proteins was obtained by using synthesized recombined proteins of Flaviviridae or HCV-related viruses (19,23,47,49,50).Due to multiple enzymatic and biological activities associated with NS3, this protein appears to be the most promising target for antiviral agents. The protease activity of NS3 is the subject of numerous studies and has been well characterized previously (24, 31).…”

mentioning

confidence: 99%

Purification and Characterization of West Nile Virus Nucleoside Triphosphatase (NTPase)/Helicase: Evidence for Dissociation of the NTPase and Helicase Activities of the Enzyme

Borowski

Niebuhr

Mueller

et al. 2001

J Virol

111

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West Nile virus (WN virus), a member of the family of Flaviviridae, is a small enveloped single-stranded RNA positivestrand virus. The viral genome encodes a monocistronic polyprotein of 3,430 amino acids that is processed into three structural proteins, protein M, capsid protein C, and glycoprotein E, and seven nonstructural (NS) proteins (NS1, NS2A, NS2B, NS3, NS4A, NS4B, and NS5) (10, 11, 52). The processing of the polyprotein is carried out by the host signal peptidase associated with the endoplasmic reticulum and viral proteases. The polyprotein of WN virus and its processing are similar to those of the pestivirus-and hepatitis C virus (HCV)-related viruses (36,44,55). Sequence analysis of the nonstructural region of WN virus polyprotein revealed numerous conserved motifs specific for serine proteases, RNA helicase with intrinsic RNA-stimulated nucleoside triphosphatase (NTPase) localized in the NS3 protein, and RNA-directed RNA polymerase associated with the NS5 protein (3, 16, 17). These predictions were partially confirmed by verifying the enzymatic properties of a COOH-terminal segment of NS3 released from a membrane fraction of infected cells by subtilisin (54). Further information about the interactions and functions of the viral proteins was obtained by using synthesized recombined proteins of Flaviviridae or HCV-related viruses (19,23,47,49,50).Due to multiple enzymatic and biological activities associated with NS3, this protein appears to be the most promising target for antiviral agents. The protease activity of NS3 is the subject of numerous studies and has been well characterized previously (24, 31). However, despite the importance of enzymes modulating RNA structures in diverse metabolic processes and their critical role in the life cycles of viruses whose genomes are composed of RNA, only limited information on the viral helicases or helicase-like enzymes is available.Helicases are capable of enzymatically unwinding duplex DNA or RNA structures by disrupting the hydrogen bonds that keep the two strands together (18,21). The unwinding reaction is accomplished by the hydrolysis of ␥-phosphate of nucleotide triphosphate (NTP). Based on sequence comparisons, the viral helicases have been divided into three superfamilies. The WN virus helicase is a member of superfamily II (SFII), which includes helicases from bymovirus, potyvirus, pestivirus, herpesvirus, poxvirus, HCV, and other Flaviviridae (22). All of the helicases contain seven highly conserved amino acid sequences (motifs I to VII) that are located on the surfaces of domains 1 and 2 of the three-domain enzymes. The involvement of the motifs in NTP binding, NTP hydrolysis, and the binding of polynucleotide(s) was well explained by resolving the crystal structures of several enzymes (25,57). However, these structures did not elucidate the mechanisms coupling ATP hydrolysis to the unwinding reaction. Although numerous studies about the quantification of the interaction of SFII helicases with NTP and polynucleotides were performed, uniform resul...

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Identification and characterization of the RNA helicase activity of Japanese encephalitis virus NS3 protein

Cited by 65 publications

References 33 publications

Understanding Helicases as a Means of Virus Control

Understanding Helicases as a Means of Virus Control

Modulation of the Nucleoside Triphosphatase/RNA Helicase and 5′-RNA Triphosphatase Activities of Dengue Virus Type 2 Nonstructural Protein 3 (NS3) by Interaction with NS5, the RNA-dependent RNA Polymerase

Purification and Characterization of West Nile Virus Nucleoside Triphosphatase (NTPase)/Helicase: Evidence for Dissociation of the NTPase and Helicase Activities of the Enzyme

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