2021
DOI: 10.4014/jmb.2009.09034
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Identification and Monitoring of Lactobacillus delbrueckii Subspecies Using Pangenomic-Based Novel Genetic Markers

Abstract: Genetic markers currently used for the discrimination of Lactobacillus delbrueckii subspecies have low efficiency for identification at subspecies level. Therefore, our objective in this study was to select novel genetic markers for accurate identification and discrimination of six L. delbrueckii subspecies based on pangenome analysis. We evaluated L. delbrueckii genomes to avoid making incorrect conclusions in the process of selecting genetic markers due to mislabeled genomes. Genome analysis showed that two … Show more

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Cited by 8 publications
(2 citation statements)
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“…Prior pangenome studies of lactic acid bacteria were focused on a few of the selected species, such as L. plantarum (127 genomes) (Carpi et al, 2022), L.delbrueckii (41 genomes) (Kim et al, 2021), L. acidophilus (46 genomes) (Huang et al, 2021), L. paracaseii (34 genomes) (Smokvina et al, 2013) and Lactobacillus spp. (Inglin et al, 2018).…”
Section: Discussionmentioning
confidence: 99%
“…Prior pangenome studies of lactic acid bacteria were focused on a few of the selected species, such as L. plantarum (127 genomes) (Carpi et al, 2022), L.delbrueckii (41 genomes) (Kim et al, 2021), L. acidophilus (46 genomes) (Huang et al, 2021), L. paracaseii (34 genomes) (Smokvina et al, 2013) and Lactobacillus spp. (Inglin et al, 2018).…”
Section: Discussionmentioning
confidence: 99%
“…This genomic variation can be related to the differences in the number of unique genes observed across the strains, in which the subspecies lactis had the highest number. The pangenome analysis of Lactobacillus delbrueckii species has already been carried out by Inglin et al (2018) and Kim et al (2021) . However, the above authors did not perform a functional analysis related to the probiosis of these strains.…”
Section: Discussionmentioning
confidence: 99%