The amino acid sequence of a brain-specific protein, S-100, has been determined by thc analysis of four cyanogen bromide peptides and fourteen tryptic peptides derived from the protein. The protein chain consists of 91 amino acid residues and has a molecular weight of 10507. The sequence shows regions of strong clustering of hydrophobic, basic and acidic amino acids, with an apparent calcium-binding site in the acidic cluster.S-100 protein is a brain-specific protein [l], found mainly in the cytoplasm of glial cells and partially in the nuclei of neurons [2 -51, as well as in a form bound to the membrane [6,7]. The biological function of this protein is unknown, but previous results suggest a role for this protein in the function or development of the nervous system [3,8 -11 1.Protein-chemical studies showed that S-100 protein is an extremely acidic protein with a molecular weight of approximately 20000 [12-151. Although it was thought to be an homogeneous protein when originally found [l] and in some following publications [13,16, 171, reports have also appeared which suggest the heterogeneity of this protein preparation [12,15, 18 -201. Recently, acidic proteins in bovine brain extract have been studied in detail, and the existence of two S-1 00 protein components (phenylalanine-rich acidic proteins: PAP I-a protein and PAP I-b protein) has been demonstrated [21]. These two proteins exhibit similar properties in the molecular weight, amino acid composition and in novel ultraviolet absorption spectra and appear to have a common amino acid sequence in a portion of the molecules [21]. Sequencing and molecular weight studies on one of the proteins, PAP I-b protein, showed that this protein is a dimer of two identical polypeptide chains in aqueous solution [22].The present paper describes the determination of the complete amino acid sequence of PAP I-b protein. The sequence shows four clusters of chemically similar residues, in the order: NHz-hydrophobicAbbruviutions. Tos-Phe-CHzC1, L-1-tosylamido-2-phenylethyl chloromethyl ketone; Pth, phenylthiohydantoin.Enzymes. Trypsin (EC 3.4.21.4); carboxypeptidase A (EC 3.4.12.2); carboxypeptidase B (EC 3.4.12.3); carboxypeptidase P (EC 3.4.12.-).basic-acidic-hydrophobic-COOH. The acidic cluster has a high sequence homology with the calciumbinding sites of troponin C and parvalbumin, suggesting a possible evolutionary relationship among these proteins.
MATERIALS AND METHODS
ReagentsSephadex G-25 (particle size, 20-80 pm), Sephadex G-50 (10-40 pm), DEAE-Sephadex A-25 (40 to 120 pm) and SP-Sephadex C-25 (40-120 pm) were purchased from Pharmacia, Bio-Gel P 6 (particle size, below 37 pm) from Bio-Rad and Partisil 5 from Whatman. Trypsin treated with ~-1-tosylaniido-2-phenylethyl chloromethyl ketone (Tos-Phe-CHzCl) (2 x recrystallized) and carboxypeptidase A and B (diisopropyl-fluorophosphate-treated) were purchased from Worthington, lima bean trypsin inhibitor from Nutritional Biochemicals and acid carboxypeptidase from Penicilliuni piztliinellum from Takara Shuzo (Shiga, Jap...