The self-transmissible plasmid pTR2030 mobilized nonconjugative heterologous cloning vectors pGK12 (Cmr Emr) and pSA3 (Emr) at frequencies of 10-s to 10-6 per input donor. Transconjugants harbored a 51-or 58-kilobase (kb) plasmid not found in the parental strains that cotransferred at high frequency with Cmr Emr and pTR2030-encoded phage resistance (Hsp+) in second-round matings (10'1 per input donor).Restriction endonuclease mapping and DNA-DNA hybridization identified the 51-to 58-kb plasmids as pTR2030::vector cointegrates. Examination of four cointegrates indicated that pGK12 and pSA3 had inserted within two locations on pTR2030. Resolution of the cointegrates generated vector derivatives containing a 0.8-kb insert of pTR2030 DNA. Restriction analyses of several resolution plasmids indicated that the 0.8-kb element had inserted into various positions within pGK12 and pSA3 and in certain cases had inactivated the Cmr or Emr marker of pGK12. A conjugative mobilization assay demonstrated that the 0.8-kb element, designated IS946, mediated transpositional recombination. Nucleotide sequence determination identified IS946 as an 808-base-pair (bp) insertion sequence sharing ca. 96% homology with lactococcal insertion sequence ISSI. IS946 differed by 27 and 31 bp from ISSIS and ISSIT, respectively, and in 2 of 226 amino acids in the deduced sequence of the putative transposase. IS946 has perfect 18-bp terminal inverted repeats, identical to ISSI, and similarly generated 8-bp direct repeats of the target site upon insertion.Insertion sequences (IS) are discrete segments of DNA capable of translocation within a genome independent of the host general recombination (Rec) system. They range in size from 700 to 1,800 base pairs (bp), only encode proteins required for transposition, possess inverted terminal repeats of 15 to 25 bp, and generate short direct repeats at the site of insertion. IS elements were first discovered as spontaneous insertions into bacterial operons that caused mutations. They have since been shown to mediate various DNA rearrangements that include simple insertion, cointegration, resolution, inversion, deletion, and excision (for reviews see references 3, 7, 16, and 20).To our knowledge, only a single IS element has been characterized from the genus Lactococcus. Plasmidencoded lactose-fermenting ability (Lac') was conjugally transferred from Lactococcus lactis subsp. lactis ML3 via cointegration of pSK08 (Lac') and the self-transmissible (Tra+) plasmid pRS01 (2). Restriction mapping of the recombinant plasmids (2) and subsequent DNA sequencing of the junction fragments (31) identified a new 808-bp insertion sequence, ISSI, that mediated cointegrate formation. In L. lactis C20, Kondo and Gillies (J. Dairy Sci. 72[Suppl. 11:114, abstract 274, 1989) reported ISSIT-mediated cointegrate formation between plasmids pJK550 (Lac') and pJK448 (Tra+) that were identical to pSK08 (Lac') and pRS01 (Tra+) from L. lactis ML3. There have been additional reports of transposable elements on lactococcal plasmids; ho...