As enterprises look forward to new market share and supply chain opportunities, innovative strategies and sustainable manufacturing play important roles for micro-, small, and mid-sized enterprises worldwide. Sustainable manufacturing is one of the practices aimed towards deploying green energy initiatives to ease climate change, presenting three main pillars—economic, social, and environmental. The issue of how to reach sustainability goals within the sustainable manufacturing of pillars is a less-researched area. This paper’s main purpose and novelty is two-fold. First, it aims to provide a hierarchy of the green energy indicators and their measurements through a multi-criteria decision-making point of view to implement them as an alliance strategy towards sustainable manufacturing. Moreover, we aim to provide researchers and practitioners with a forecasting method to re-prioritize green energy indicators through a linearity factor model. The CODAS–Hamming–Mahalanobis method is used to obtain preference scores and rankings from a 50-item list. The resulting top 10 list shows that enterprises defined nine items within the economic pillar as more important and one item on the environmental pillar; items from the social pillar were less important. The implication for MSMEs within the manufacturing sector represents an opportunity to work with decision makers to deploy specific initiatives towards sustainable manufacturing, focused on profit and welfare while taking care of natural resources. In addition, we propose a continuous predictive analysis method, the linearity factor model, as a tool for new enterprises to seek a green energy hierarchy according to their individual needs. The resulting hierarchy using the predictive analysis model presented changes in the items’ order, but it remained within the same two sustainable manufacturing pillars: economic and environmental.