“…While one limitation of analyzing tissue in bulk is that it does not allow us to assign the changes in gene expression to certain cell types, it is an interesting notion that some of the most significantly changed genes in PFF-injected mice, e.g., Cst7, Itgax, Clec7a, and Lilrb4, are found to be expressed by disease-associated microglia in models of Alzheimer's disease [51][52][53], suggesting that shared microglial responses exist between protein-misfolding diseases. Additionally, the upregulation of Clec7a, encoding the pathogen recognition receptor Clec7a, in microglia has recently been shown to promote neuroinflammation in a mouse model of Parkinson's disease [54], while the roles of Cst7, Itgax, and Lilrb4 in relation to Parkinson's disease remain to be further investigated. Furthermore, we found that Tnf was differentially expressed upon PFF treatment, consistent with published in vitro data from primary microglia [28].…”