implicated in a number of human diseases, such as atherosclerosis (3), nonalcoholic fatty liver (4), diabetes (5), Alzheimer's disease (6), and cancer (7,8). Advances in lipidomic techniques and strategies, led by the LIPID MAPS consortium, have greatly enhanced our understanding of the distribution and biological roles of lipids (9-13). Modern mass spectrometry (MS), coupled with electrospray ionization (ESI), is the key to qualitative and quantitative lipidomic analysis. Typical MS-based lipidomic strategies are shotgun (i.e., direct infusion) lipidomics (9, 14) and liquid chromatography (LC)-MS lipidomics (11,15,16). Shotgun lipidomics relies on partial intrasource separation of lipid classes through varying the pH of the lipid solution and identification of lipid species by their characteristic fragmentation in tandem MS analysis (9,17). This approach has the advantage of being high-throughput, but it also has several disadvantages: a) suppression of low-abundant species by major polar lipids such as phosphatidylcholines; b) difficulty in analysis of lipid species that are poorly ionized by ESI; and c) inability to provide structural information on isobaric and isomeric species. The LC-MS-based strategy utilizes targeted analysis of each lipid class under conditions that are optimized for that particular class (11,15,16,18). This strategy has the advantages of being specific, sensitive, and comprehensive, but it also has limitations, such as being time consuming and less cost effective. To increase the throughput of the LC-MS lipidomics while maintaining the specificity and sensitivity, we desire improved chromatographic techniques and additional dimensions of separation that are orthogonal to LC and MS. Lipids play important roles in maintaining membrane structures and mediating signaling pathways (1, 2). Dysregulated lipid biosynthesis and metabolism have been
Abstract Ion mobility-mass spectrometry (IM-MS) has proven to be a highly informative technique for the characterization of lipids from cells and tissues. We report the combination of hydrophilic-interaction liquid chromatography (HILIC) with traveling-wave IM-MS (TWIM-MS