Repressor of toxins (Rot) is known to be a global regulator of virulence gene expression in Staphylococcus aureus. The function of Rot, but not the transcription of rot, is regulated by the staphylococcal accessory gene regulator (Agr) quorum-sensing system. In addition, the alternative sigma factor ( B ) has a repressive effect on rot expression during the postexponential phase of growth. The transcriptional profiles of Rot in B -positive and B -negative strains in the postexponential and stationary phases of growth were compared. An upregulation of rot expression was observed during the stationary phase of growth, and this upregulation occurred in a B -dependent manner. The effects of other staphylococcal transcriptional factors were also investigated. Electrophoretic mobility shift assays revealed that proteins present in staphylococcal lysates retarded the mobility of the rot promoter fragment and that the effect was reduced, but not eliminated, with lysates from strains lacking a functional SarS protein. A modest upregulation of rot expression was also observed in sarSnegative strains. Affinity purification of proteins binding to the rot promoter fragment, followed by N-terminal protein sequencing, identified the SarA and SarR proteins. Primer extension analysis of the rot promoter revealed a number of discreet products. However, these RNA species were not associated with identifiable promoter activity and likely represented RNA breakdown products. Loss of Rot function during the postexponential phase of growth likely involves degradation of the rot mRNA but not the inhibition of rot transcription.Staphylococcus aureus is an important pathogen in food poisoning and nosocomial and community-acquired infections. Currently, the increasing case numbers of multiply antibioticresistant staphylococcal infections in the hospital environment have made this organism a public health concern. The virulence factors of this organism include a variety of exoproteins and cell wall-associated components (24). The secreted components include enterotoxins (A to E and G to R); leukotoxin; exofoliative toxins; alpha-, beta-, gamma-, and delta-hemolytic toxins; toxic shock syndrome toxin; coagulase; and secreted enzymes such as nuclease and proteases (24)(25)(26)(27). Coordinated regulation of expression of these virulence genes is an important feature of the pathogenicity of S. aureus. In addition, the regulatory networks might provide sites of possible therapeutic intervention in the treatment of staphylococcal infections.Several loci have been reported to be global regulators for expression of various virulence factors, including the accessory gene regulator (Agr), staphylococcal accessory regulator (SarA), and repressor of toxins (Rot) (12,32,43). Among these regulatory systems, the Agr system has been the best characterized. The Agr system consists of two transcripts RNAII and RNAIII, which are transcribed from P2 and P3 promoters (12). RNAII encodes the structural components of the quorum-sensing system, including AgrBDCA ...