2019
DOI: 10.26434/chemrxiv.9913046
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Identification of Important Normal Modes in Nonadiabatic Dynamics Simulations by Coherence, Correlation, and Frequency Analyses

Abstract: <div>Nonadiabatic dynamics simulations of molecular systems with a large number of nuclear degrees of freedom become increasingly feasible, but there is still a need to extract from such simulations a small number of most important modes of nuclear motion, for example to obtain general insight or to construct low-dimensional model potentials for further simulations. Standard techniques for this dimensionality reduction employ statistical methods that identify the modes that account for the largest varian… Show more

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“…For example, normal mode coherence or correlation analyses include the comparison of the motion of AIMD trajectories in excited states and in the ground state or monitor the effect of normal modes on excitation energies, energy gaps, and the overlaps between electronic state wave functions. 196 Furthermore, the FrozeNM algorithm can be used to freeze normal modes and observe the effect that their exclusion has on the time evolution of the electronic states. 197 Finally, a machine-learning algorithm has been developed that can identify global reaction coordinates in excited-state reactions from AIMD simulations in an automatic manner, given that the AIMD simulations provide sufficiently large data sets for statistical evaluation.…”
Section: Ab Initio Molecular Dynamicsmentioning
confidence: 99%
“…For example, normal mode coherence or correlation analyses include the comparison of the motion of AIMD trajectories in excited states and in the ground state or monitor the effect of normal modes on excitation energies, energy gaps, and the overlaps between electronic state wave functions. 196 Furthermore, the FrozeNM algorithm can be used to freeze normal modes and observe the effect that their exclusion has on the time evolution of the electronic states. 197 Finally, a machine-learning algorithm has been developed that can identify global reaction coordinates in excited-state reactions from AIMD simulations in an automatic manner, given that the AIMD simulations provide sufficiently large data sets for statistical evaluation.…”
Section: Ab Initio Molecular Dynamicsmentioning
confidence: 99%