The wall-less mycoplasmas have revealed unusual microbial strategies for adaptive variation of antigenic membrane proteins exposed during their surface colonization of host cells. In particular, high-frequency mutations affecting the expression of selected surface lipoproteins have been increasingly documented for this group of organisms. A novel manifestation of mutational phase variation is shown here to occur in Mycoplasma fermentans, a chronic human infectious agent and possible AIDS-associated pathogen. A putative ABC type transport operon encoding four gene products is identified. The 3 distal gene encoding P78, a known surface-exposed antigen and the proposed substrate-binding lipoprotein of the transporter, is subject to localized hypermutation in a short homopolymeric tract of adenine residues located in the N-terminal coding region of the mature product. High-frequency, reversible insertion/deletion frameshift mutations lead to selective phase variation in P78 expression, whereas the putative nucleotide-binding protein, P63, encoded by the most 5 gene of the operon, is continually expressed. Mutation-based phase variation in specific surfaceexposed microbial transporter components may provide an adaptive advantage for immune evasion, while continued expression of other elements of the same transporter may preserve essential metabolic functions and confer alternative substrate specificity. These features could be critical in mycoplasmas, where limitations in both transcriptional regulators and transport systems may prevail. This study also documents that P63 contains an uncharacteristic hydrophobic sequence between predicted nucleotide binding motifs and displays an amphiphilic character in detergent fractionation. Both features are consistent with an evolutionary adaptation favoring integral association of this putative energy-transducing component with the single mycoplasma membrane.With an ability to establish persistent or chronic infections in its mammalian host (30, 54), Mycoplasma fermentans typifies many of the nearly 100 species in the genus Mycoplasma (44). This agent has been implicated as a human pathogen associated with fulminant respiratory distress syndrome (31, 33) and pathologic lesions in immunocompromised individuals with AIDS (7, 32). Like all mycoplasmas, this species is evolutionarily related to the low-GϩC-content branch of gram-positive eubacteria (61) and contains a small genome (20, 23). Mycoplasmas offer interesting and useful models as minimal prokaryotic pathogens. Notably, these organisms endure an extracellular existence exposed to host defenses, yet they possess only a single limiting plasma membrane without the additional protective outer membrane system or cell wall matrix characteristic of other eubacteria. Consequently, critical systems for transport and other metabolic pathways associated with "periplasmic" functions in both gram-negative and gram-positive eubacteria (4, 36) are on the membrane surface of mycoplasmas. How such components are concealed or otherwise ev...