This paper investigates the identification problem for a class of input nonlinear systems whose disturbance is in the form of the moving average model. In order to improve the computation complexity, the key term separation principle is introduced to avoid the redundant parameter estimation. Based on the decomposition technique, a hierarchical Newton iterative identification method combining the key term separation principle is proposed for enhancing the estimation accuracy and handling the computational load with the presence of the high dimensional matrices. In the identification procedure, the unknown internal items or vectors are replaced with their iterative estimates. The effectiveness of the proposed identification methods is shown via a numerical simulation example.