‘Retrospective targeted metagenomics study on nasopharyngeal swab samples from the Dutch NIVEL surveillance network’ from 2006 to 2017 of 155 patients has been submitted in the NCBI database (Ac- cid:PRJNA562998). The samples have been classified as either Acute Respiratory Infection (ACI) or Influenza-like Illness (ILI). This dataset is yet to be analyzed in a published paper.